YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996925, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996925, gi|....

Description	E-value	Query Range	Subject Range
gi\|146398031, gi... - gi\|88936915\|ref\|ZP_01142508.1\| lytic murein transglycosylase, putative [Geobacter uraniumreducens Rf...	189.0	[0..12]	[200..10]
gi\|110600846, gi... - gi\|222055922\|ref\|YP_002538284.1\| Lytic transglycosylase catalytic [Geobacter sp. FRC-32], gi\|2215652...	186.0	[0..1]	[199..1]
gi\|78223160, gi\|... - gi\|78223160\|ref\|YP_384907.1\| lytic transglycosylase, catalytic [Geobacter metallireducens GS-15], gi...	178.0	[0..25]	[201..25]
gi\|92392901, gi\|... - gi\|93005223\|ref\|YP_579660.1\| lytic transglycosylase, catalytic [Psychrobacter cryohalolentis K5], gi...	178.0	[0..2]	[202..41]
gi\|2634555, gi\|1... - gi\|2634555\|emb\|CAB14053.1\| yomI [Bacillus subtilis subsp. subtilis str. 168], gi\|16079194\|ref\|NP_390... gi\|81342088 - gi\|81342088\|sp\|O31976.1\|YOMI_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized transglycosy... TMP_BPSPB - Probable tape measure protein OS=Bacillus phage SPbeta GN=yomI PE=3 SV=1	177.0	[0..71]	[196..1416]
gi\|25493281 - pir\|\|D84006 lytic transglycosylase BH2852 [imported] - Bacillus halodurans (strain C-125) gi\|10175473, gi\|... - gi\|15615415\|ref\|NP_243718.1\| lytic transglycosylase [Bacillus halodurans C-125], gi\|10175473\|dbj\|BAB...	176.0	[0..16]	[196..49]
gi\|71064928, gi\|... - gi\|71064928\|ref\|YP_263655.1\| lytic transglycosylase [Psychrobacter arcticus 273-4], gi\|71037913\|gb\|A...	175.0	[0..1]	[202..8]
gi\|71838495, gi\|... - gi\|71838495\|ref\|ZP_00678254.1\| SLT domain [Pelobacter propionicus DSM 2379], gi\|71741068\|gb\|EAO36227...	173.0	[0..1]	[199..1]
gi\|117923663, gi... - gi\|69260561\|ref\|ZP_00608084.1\| SLT [Magnetococcus sp. MC-1], gi\|68245392\|gb\|EAN27518.1\| SLT [Magneto...	172.0	[0..1]	[200..1]
gi\|85859833, gi\|... - gi\|85859833\|ref\|YP_462035.1\| lytic transglycosylase -like protein [Syntrophus aciditrophicus SB], gi...	167.0	[0..3]	[200..5]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTLTIMLL AGAMICSAAV APARADIYRY EDEEGVVHFT DAPTDKRFKV FMRDIKRDKK  60
   61 LRTTFRLANC ARDPKEFEPI IDQCALEFGV DRSLVKAVIH AESGYNPNAL SPKGASGLMQ 120
  121 LMPKTAKDLK VANSFDPKDN IKGGVRYLRF LLDTFKGDVT LALAAYNAGM SRVAQYGGVP 180
  181 PYQETRTYID RVLSYQKSYQ TN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: