YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996913, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996913, gi|....

Description	E-value	Query Range	Subject Range
gi\|118652866, gi... - gi\|170733460\|ref\|YP_001765407.1\| cell division protein FtsB [Burkholderia cenocepacia MC0-3], gi\|169... gi\|116648216, gi... - gi\|67666377\|ref\|ZP_00463626.1\| Septum formation initiator [Burkholderia cenocepacia HI2424], gi\|6710... gi\|107028714, gi... - gi\|67657012\|ref\|ZP_00454392.1\| Septum formation initiator [Burkholderia cenocepacia AU 1054], gi\|670...	141.0	[0..1]	[106..1]
gi\|78066881, gi\|... - gi\|78066881\|ref\|YP_369650.1\| cell division protein FtsB [Burkholderia sp. 383], gi\|77967626\|gb\|ABB09...	140.0	[0..1]	[106..1]
gi\|67549710, gi\|... - gi\|67549710\|ref\|ZP_00427561.1\| Septum formation initiator [Burkholderia vietnamiensis G4], gi\|675289...	140.0	[0..1]	[106..1]
gi\|72609661, gi\|... - gi\|74017776\|ref\|ZP_00688399.1\| Septum formation initiator [Burkholderia ambifaria AMMD], gi\|72609661... gi\|170135779, gi... - gi\|170699287\|ref\|ZP_02890336.1\| Septum formation initiator [Burkholderia ambifaria IOP40-10], gi\|170...	138.0	[0..1]	[106..1]
gi\|84355109 - gi\|84355109\|ref\|ZP_00979999.1\| COG2919: Septum formation initiator [Burkholderia cenocepacia PC184]	133.0	[0..13]	[106..2]
gi\|84362207 - gi\|84362207\|ref\|ZP_00986840.1\| COG2919: Septum formation initiator [Burkholderia dolosa AUO158]	130.0	[0..13]	[106..2]
gi\|83718705, gi\|... - gi\|83718705\|ref\|YP_442425.1\| cell division protein FtsB [Burkholderia thailandensis E264], gi\|836525... gi\|167619431 - gi\|167619431\|ref\|ZP_02388062.1\| cell divison protein FtsB [Burkholderia thailandensis Bt4] gi\|167581354 - gi\|167581354\|ref\|ZP_02374228.1\| cell divison protein FtsB [Burkholderia thailandensis TXDOH]	128.0	[0..1]	[109..1]
gi\|83623652, gi\|... - gi\|83623652\|ref\|ZP_00933917.1\| COG2919: Septum formation initiator [Burkholderia mallei JHU], gi\|254... gi\|134250655, gi... - gi\|134277005\|ref\|ZP_01763720.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|83679487, gi\|... - gi\|83679487\|ref\|ZP_00941200.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 406e],... gi\|82536727, gi\|... - gi\|82536727\|ref\|ZP_00895730.1\| hypothetical protein Bpse110_02001946 [Burkholderia pseudomallei 1106... gi\|254200263, gi... - gi\|83618746\|ref\|ZP_00929198.1\| COG2919: Septum formation initiator [Burkholderia mallei FMH], gi\|254... gi\|126451167, gi... - gi\|67646760\|ref\|ZP_00445013.1\| COG2919: Septum formation initiator [Burkholderia mallei NCTC 10247],... gi\|99909869, gi\|... - gi\|99909869\|ref\|ZP_01316967.1\| hypothetical protein Bpse1_03003656 [Burkholderia pseudomallei 1655],... gi\|67634802, gi\|... - gi\|67634802\|ref\|ZP_00433768.1\| COG2919: Septum formation initiator [Burkholderia mallei 10399], gi\|1... gi\|67642980, gi\|... - gi\|67642980\|ref\|ZP_00441730.1\| septum formation initiator family protein [Burkholderia mallei GB8 ho... gi\|82531608, gi\|... - gi\|82531608\|ref\|ZP_00890825.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 1106a]... gi\|167739318 - gi\|167739318\|ref\|ZP_02412092.1\| cell divison protein FtsB [Burkholderia pseudomallei 14] gi\|225929020, gi... - gi\|226198920\|ref\|ZP_03794483.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|167816534 - gi\|167816534\|ref\|ZP_02448214.1\| cell divison protein FtsB [Burkholderia pseudomallei 91] gi\|243062454, gi... - gi\|243062454\|gb\|EES44640.1\| septum formation initiator family protein [Burkholderia mallei PRL-20], ... gi\|167720324 - gi\|167720324\|ref\|ZP_02403560.1\| cell divison protein FtsB [Burkholderia pseudomallei DM98] gi\|237502783, gi... - gi\|237812995\|ref\|YP_002897446.1\| cell divison protein FtsB [Burkholderia pseudomallei MSHR346], gi\|2... gi\|167895024 - gi\|167895024\|ref\|ZP_02482426.1\| cell divison protein FtsB [Burkholderia pseudomallei 7894] gi\|167903408 - gi\|167903408\|ref\|ZP_02490613.1\| cell divison protein FtsB [Burkholderia pseudomallei NCTC 13177] gi\|167824929 - gi\|167824929\|ref\|ZP_02456400.1\| cell divison protein FtsB [Burkholderia pseudomallei 9] gi\|167846445 - gi\|167846445\|ref\|ZP_02471953.1\| cell divison protein FtsB [Burkholderia pseudomallei B7210] gi\|52210293, gi\|... - gi\|53719879\|ref\|YP_108865.1\| cell division protein FtsB [Burkholderia pseudomallei K96243], gi\|52210... gi\|52427206, gi\|... - gi\|53723783\|ref\|YP_103308.1\| cell division protein FtsB [Burkholderia mallei ATCC 23344], gi\|5242720... gi\|84522301, gi\|... - gi\|84522301\|ref\|ZP_01009437.1\| COG2919: Septum formation initiator [Burkholderia mallei SAVP1], gi\|1... gi\|217420905, gi... - gi\|217420905\|ref\|ZP_03452410.1\| septum formation initiator domain protein [Burkholderia pseudomallei... gi\|254191420, gi... - gi\|67754307\|ref\|ZP_00493218.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei Pasteu... gi\|124386271, gi... - gi\|124386271\|ref\|YP_001029067.1\| cell division protein FtsB [Burkholderia mallei NCTC 10229], gi\|124... gi\|254258692, gi... - gi\|90292424\|ref\|ZP_01212037.1\| hypothetical protein Bpse17_02002966 [Burkholderia pseudomallei 1710a... gi\|167911661 - gi\|167911661\|ref\|ZP_02498752.1\| cell divison protein FtsB [Burkholderia pseudomallei 112] gi\|126220329, gi... - gi\|67737196\|ref\|ZP_00487994.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei 668], ... gi\|160698734, gi... - gi\|254177695\|ref\|ZP_04884350.1\| septum formation initiator family protein [Burkholderia mallei ATCC ... gi\|100265445, gi... - gi\|87316297\|ref\|ZP_01097315.1\| COG2919: Septum formation initiator [Burkholderia mallei 2002721280],... gi\|76579988, gi\|... - gi\|76810535\|ref\|YP_334096.1\| cell division protein FtsB [Burkholderia pseudomallei 1710b], gi\|765799... gi\|254195856, gi... - gi\|67762049\|ref\|ZP_00500753.1\| COG2919: Septum formation initiator [Burkholderia pseudomallei S13], ... gi\|85067257 - gi\|85067257\|ref\|ZP_01028110.1\| COG2919: Septum formation initiator [Burkholderia mallei 10229]	128.0	[0..1]	[111..1]
FTSB_BORPA - Cell division protein FtsB OS=Bordetella parapertussis GN=ftsB PE=3 SV=1 FTSB_BORPA - Cell division protein FtsB OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN...	123.0	[0..16]	[109..15]
gi\|91784227, gi\|... - gi\|91784227\|ref\|YP_559433.1\| cell division protein FtsB [Burkholderia xenovorans LB400], gi\|91688181...	123.0	[0..1]	[105..1]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKRMYLIPT GCILFILYFT VFGERGLLRI YHLSNERDQI RQKVGVVRDE NEKLKREIEA  60
   61 LKSDRRYLES IARKDFGLVR PNEIVYQFPT ATDRPEAKPQ QPVSTAVGAK R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.95
Match:	1wiaA
Description:	Solution structure of mouse hypothetical ubiquitin-like protein BAB25500
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.22121806916931	bayes_pls_golite062009
protein binding	1.21859981943752	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: