YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996858, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996858, gi|....

Description	E-value	Query Range	Subject Range
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	234.0	[0..1]	[202..1]
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	231.0	[0..5]	[200..2]
gi\|15888477, gi\|... - gi\|15888477\|ref\|NP_354158.1\| phosphoribosylglycinamide formyltransferase [Agrobacterium tumefaciens ... gi\|25286227 - pir\|\|F97498 phosphoribosylglycinamide formyltransferase nmb1566 [imported] - Agrobacterium tumefacie...	229.0	[0..2]	[201..8]
gi\|89080493, gi\|... - gi\|89095239\|ref\|ZP_01168161.1\| phosphoribosylglycinamide formyltransferase [Oceanospirillum sp. MED9...	228.0	[0..5]	[200..3]
gi\|77457859, gi\|... - gi\|77457859\|ref\|YP_347364.1\| phosphoribosylglycinamide formyltransferase [Pseudomonas fluorescens Pf...	225.0	[0..1]	[198..1]
gi\|56460763, gi\|... - gi\|56460763\|ref\|YP_156044.1\| phosphoribosylglycinamide formyltransferase [Idiomarina loihiensis L2TR...	225.0	[0..5]	[202..2]
gi\|86165568, gi\|... - gi\|87119177\|ref\|ZP_01075075.1\| phosphoribosylglycinamide formyltransferase 1 [Marinomonas sp. MED121...	223.0	[0..1]	[202..1]
gi\|46849393 - gi\|46849393\|dbj\|BAD17906.1\| glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synt...	223.0	[0..3]	[206..793]
gi\|152989431, gi... - gi\|94417957\|ref\|ZP_01297773.1\| hypothetical protein PaerP_01000106 [Pseudomonas aeruginosa PA7], gi\|...	223.0	[0..1]	[198..1]
gi\|221565153, gi... - gi\|222055864\|ref\|YP_002538226.1\| phosphoribosylglycinamide formyltransferase [Geobacter sp. FRC-32],...	223.0	[0..1]	[200..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQPLAVGVL VSGNGSNLQA IIDRIEDGSL PARIVCVISN KADAFGLERA RKHGVPAIHI  60
   61 DHRAHGGRES YDAALVETLR SHGVQLVVLA GFMRIVTPVL LDAFPNAVMN IHPALLPAFP 120
  121 GLHAQAQALR YGVKFSGCTV HFVDEGTDTG PIIIQAAVPV MDDDDEASLS ARIQREEHRA 180
  181 YPEAIRLFAA KRLRIEGRKV SILQGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1c2tA
Description:	Glycinamide ribonucleotide transformylase, GART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: