YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996278, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996278, gi|....

Description	E-value	Query Range	Subject Range
gi\|6580638, gi\|2... - gi\|6580638\|emb\|CAB63173.1\| putative cytochrome B subunit [Streptomyces coelicolor A3(2)], gi\|2121944...	199.0	[0..2]	[218..24]
gi\|78194855, gi\|... - gi\|78223600\|ref\|YP_385347.1\| succinate dehydrogenase subunit C [Geobacter metallireducens GS-15], gi...	199.0	[0..1]	[220..1]
gi\|45657854, gi\|... - gi\|45657854\|ref\|YP_001940.1\| succinate dehydrogenase cytochrome B subunit [Leptospira interrogans se... gi\|24195569, gi\|... - gi\|24214598\|ref\|NP_712079.1\| cytochrome B subunit [Leptospira interrogans serovar Lai str. 56601], g...	199.0	[0..4]	[218..8]
gi\|29610974, gi\|... - gi\|29833849\|ref\|NP_828483.1\| cytochrome b subunit [Streptomyces avermitilis MA-4680], gi\|29610974\|db...	198.0	[0..2]	[218..16]
gi\|110638859, gi... - gi\|110638859\|ref\|YP_679068.1\| succinate dehydrogenase subunit C [Cytophaga hutchinsonii ATCC 33406],... gi\|48856884 - gi\|48856884\|ref\|ZP_00311041.1\| COG2009: Succinate dehydrogenase/fumarate reductase, cytochrome b sub...	196.0	[0..2]	[215..7]
gi\|116124805, gi... - gi\|116331116\|ref\|YP_800834.1\| hypothetical protein LBJ_1503 [Leptospira borgpetersenii serovar Hardj... gi\|116328390, gi... - gi\|116328390\|ref\|YP_798110.1\| hypothetical protein LBL_1727 [Leptospira borgpetersenii serovar Hardj...	192.0	[0..4]	[218..8]
gi\|53798217 - ref\|ZP_00358786.1\| COG1704: Uncharacterized conserved protein [Chloroflexus aurantiacus] gi\|76261586, gi\|... - gi\|76261586\|ref\|ZP_00769191.1\| Succinate dehydrogenase, cytochrome b558 subunit [Chloroflexus aurant... gi\|222449170, gi... - gi\|222525291\|ref\|YP_002569762.1\| succinate dehydrogenase (or fumarate reductase) cytochrome b subuni...	187.0	[0..1]	[218..5]
gi\|53715830, gi\|... - gi\|53715830\|ref\|YP_101822.1\| fumarate reductase cytochrome b subunit [Bacteroides fragilis YCH46], g... gi\|253564639, gi... - gi\|253564639\|ref\|ZP_04842096.1\| fumarate reductase transmembrane cytochrome b subunit [Bacteroides s... gi\|31540475 - gi\|31540475\|gb\|AAO42599.1\| fumarate reductase cytochrome b subunit [Bacteroides fragilis] gi\|60683750, gi\|... - gi\|60683750\|ref\|YP_213894.1\| fumarate reductase transmembrane cytochrome b subunit [Bacteroides frag...	185.0	[0..1]	[201..1]
gi\|86569010, gi\|... - gi\|86742148\|ref\|YP_482548.1\| succinate dehydrogenase subunit C [Frankia sp. CcI3], gi\|86569010\|gb\|AB...	185.0	[0..3]	[218..28]
gi\|251841190, gi... - gi\|253569171\|ref\|ZP_04846581.1\| conserved hypothetical protein [Bacteroides sp. 1_1_6], gi\|251841190... gi\|29340366, gi\|... - gi\|29348462\|ref\|NP_811965.1\| putative cytochrome B subunit [Bacteroides thetaiotaomicron VPI-5482], ...	185.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFTSSVGR KVLMAITGQF MVLFVIVHML GNSSIFIPGG INAYAEHLHA LPPLVWAFRL  60
   61 VMLVAAGIHI LFGIQLSLEN RAANPDTYAV KNYKKATMGS LSMLYTGLLL LSFIIYHLLH 120
  121 FTIRATPDIK LGVDSLGRFD VFGMVTNSFS HGIIAFIYIA AMVVLFLHLS HGIQSFFQTM 180
  181 GWNNDKSLPV FSKIGMIAAV VLLLGYATIP FVIVTGILKG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.69
Match:	1qlbC
Description:	Fumarate reductase respiratory complex cytochrome b subunit, FrdC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	9.98683509225783	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.56400635334124	bayes_pls_golite062009
oxidoreductase activity	5.79163180464915	bayes_pls_golite062009
electron carrier activity	4.16757432586645	bayes_pls_golite062009
catalytic activity	0.916346296983561	bayes_pls_golite062009
binding	0.1167544383299	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: