YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39983140, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39983140, gi|....

Description	E-value	Query Range	Subject Range
gi\|35211244, gi\|... - gi\|37520251\|ref\|NP_923628.1\| superoxide dismutase [Gloeobacter violaceus PCC 7421], gi\|35211244\|dbj\|...	291.0	[0..5]	[192..117]
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	290.0	[0..1]	[191..1]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1	290.0	[0..1]	[191..1]
gi\|227177082, gi... - gi\|227553829\|ref\|ZP_03983878.1\| Mn superoxide dismutase [Enterococcus faecalis HH22], gi\|227177082\|g... SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sodA PE=3 SV=1 SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1	289.0	[0..1]	[191..5]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	289.0	[0..1]	[191..1]
gi\|29373127 - gi\|29373127\|gb\|AAO72712.1\| Mn superoxide dismutase [Melopsittacus undulatus]	288.0	[0..1]	[191..30]
gi\|45383702, gi\|... - gi\|45383702\|ref\|NP_989542.1\| superoxide dismutase 2, mitochondrial [Gallus gallus], gi\|12034955\|gb\|A...	287.0	[0..1]	[192..30]
gi\|498260 - gi\|498260\|gb\|AAA30655.1\| manganous superoxide dismutase	286.0	[0..1]	[191..37]
SODM_HORSE - Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1	286.0	[0..1]	[191..28]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYEAKDYSK LIGMAGFSEA LLKNHFTLYQ GYVTNTNKVL DILAKMLADG ATATPEYAEL  60
   61 KRRLGWEFNG MRLHEFYFEN LGGNGAIDQA GKLAAKIVAD FGSYEAWEKD FRATGAMRGI 120
  121 GWAVLYQDSA TGKLINFWVN EHDVAHPAGC TPILIMDVFE HAFMLDYGLK RPDYIEAFFK 180
  181 NIDWKAAEAR LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.221849
Match:	1gv3A
Description:	Mn superoxide dismutase (MnSOD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
superoxide dismutase activity	5.27425026237528	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	5.27425026237528	bayes_pls_golite062009
catalytic activity	0.760929162716404	bayes_pls_golite062009
binding	0.395331369608722	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: