YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39996102, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39996102, gi|....

Description	E-value	Query Range	Subject Range
gi\|41725333, gi\|... - gi\|71907384\|ref\|YP_284971.1\| UDP-N-acetylglucosamine acyltransferase [Dechloromonas aromatica RCB], ...	194.0	[0..4]	[257..1]
gi\|68543863, gi\|... - gi\|68543863\|ref\|ZP_00583550.1\| Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferas...	193.0	[0..4]	[257..1]
gi\|160860132, gi... - gi\|160874610\|ref\|YP_001553926.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS195],... gi\|149114485, gi... - gi\|217974048\|ref\|YP_002358799.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS223],... gi\|151364607, gi... - gi\|152999989\|ref\|YP_001365670.1\| UDP-N-acetylglucosamine acyltransferase [Shewanella baltica OS185],...	193.0	[0..4]	[257..1]
LPXA_THIDA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Thiobacillus denitrificans...	193.0	[0..2]	[257..1]
gi\|37680729, gi\|... - gi\|37680729\|ref\|NP_935338.1\| UDP-N-acetylglucosamine acyltransferase [Vibrio vulnificus YJ016], gi\|3...	191.0	[0..3]	[257..13]
LPXA_VIBVY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus GN=lpxA ... LPXA_VIBVU - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Vibrio vulnificus (strain ...	190.0	[0..3]	[257..6]
lcl\|NC_016856.1_... - [gene=lpxA] [protein=UDP-N-acetylglucosamine acyltransferase] [protein_id=YP_005235900.1] [location=... LPXA_SALCH - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella choleraesuis GN... LPXA_SALTY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella typhimurium GN=... LPXA_SALTY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella typhimurium (st... gi\|205335011, gi... - gi\|205335011\|gb\|EDZ21775.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... gi\|205331549, gi... - gi\|205331549\|gb\|EDZ18313.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... gi\|205322198, gi... - gi\|205322198\|gb\|EDZ10037.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... LPXA_SALNS - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella newport (strain... gi\|205340601, gi... - gi\|205340601\|gb\|EDZ27365.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... gi\|195632901, gi... - gi\|195632901\|gb\|EDX51355.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... gi\|168264636, gi... - gi\|205346926\|gb\|EDZ33557.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase [S... LPXA_SALPB - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi B (st... LPXA_SALCH - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella choleraesuis (s... LPXA_SALPA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi A (st... LPXA_SALTY - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella typhimurium GN=... LPXA_SALPA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi A GN=... LPXA_SALPB - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi B (st... LPXA_SALCH - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella choleraesuis GN... LPXA_SALPK - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi A (st... gi\|238911294 - gi\|238911294\|ref\|ZP_04655131.1\| UDP-N-acetylglucosamine acyltransferase [Salmonella enterica subsp. ... gi\|197240440, gi... - gi\|197262185\|ref\|ZP_03162259.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferas... LPXA_SALA4 - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella agona (strain S... gi\|194470643, gi... - gi\|194470643\|ref\|ZP_03076627.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferas... LPXA_SALPC - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella paratyphi C (st... LPXA_SALEP - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella enteritidis PT4... LPXA_SALG2 - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase OS=Salmonella gallinarum (str... gi\|199604954, gi... - gi\|200387856\|ref\|ZP_03214468.1\| acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferas...	190.0	[0..3]	[257..6]
gi\|187478240, gi... - gi\|187478240\|ref\|YP_786264.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferas...	189.0	[0..1]	[258..1]
gi\|33601594, gi\|... - gi\|33601594\|ref\|NP_889154.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella bronchiseptica RB50...	189.0	[0..1]	[258..1]
gi\|33573189 - gi\|33573189\|emb\|CAE36841.1\| acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase ... gi\|33596186 - gi\|33596186\|ref\|NP_883829.1\| UDP-N-acetylglucosamine acyltransferase [Bordetella parapertussis 12822...	189.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITNIHPTAH ISPSATIADG AEIGPNVIVG DHSSIGAGTR VMANAVIGPW TQIGENNVIH  60
   61 FGAIVGHDPQ DFGYKGEESW TIVGNGNVIR EYVTIHRGNR PGTKTMIGSN NLFMAHSHVA 120
  121 HNCELGSNII LVNGALLAGH VVVEDRVIIS GNSVVHQFCR IGTFAMMRGL SRSSRDVPPF 180
  181 CIMDDTHTVK ALNLVGLKRN GFDQSRIRAL KNAFKLLFLS GLNMQNALAE VERSLHITDD 240
  241 VRYLIDFIKS AKRGVCFGRG LIVDVEDKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2jf2A
Description:	No description for 2jf2A was found.

Predicted functions:

Term	Confidence	Notes
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	4.85526297527966	bayes_pls_golite062009
O-acyltransferase activity	4.84577168407664	bayes_pls_golite062009
acyltransferase activity	2.27754650414142	bayes_pls_golite062009
catalytic activity	2.22811944286398	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.21954683775748	bayes_pls_golite062009
transferase activity, transferring acyl groups	2.14859065831589	bayes_pls_golite062009
transferase activity	1.1230560089123	bayes_pls_golite062009
binding	0.640396679519929	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: