YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982408, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982408, gi|....

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	151.0	[0..1]	[147..247]
gi\|78195434, gi\|... - gi\|78224179\|ref\|YP_385926.1\| heat shock protein Hsp20 [Geobacter metallireducens GS-15], gi\|78195434...	147.0	[0..1]	[146..1]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	146.0	[0..6]	[147..14]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	146.0	[0..1]	[147..1]
gi\|46371976 - gi\|46371976\|gb\|AAS90623.1\| putative low molecular weight heat shock protein [uncultured soil bacteri...	145.0	[0..1]	[145..1]
gi\|118581479, gi... - gi\|71839765\|ref\|ZP_00679507.1\| Heat shock protein Hsp20 [Pelobacter propionicus DSM 2379], gi\|717397...	140.0	[0..1]	[146..1]
gi\|121590372, gi... - gi\|88949679\|ref\|ZP_01152294.1\| heat shock protein, Hsp20 family [Halorhodospira halophila SL1], gi\|8...	140.0	[0..1]	[145..1]
gi\|148265921, gi... - gi\|88937759\|ref\|ZP_01143304.1\| heat shock protein, HSP20 family [Geobacter uraniumreducens Rf4], gi\|...	140.0	[0..1]	[146..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVKYSPFR DMMNMQEQMN RLLDLAWSKQ GGEELREGAW QPPVDIFEDE NAVIIKAELP  60
   61 GIDQKDIEVR IEDNTLTIRG ERKHEEEVRK ENYHRVERYY GSFQRSFSIP ATIDQEKVRA 120
  121 SSDKGVLTIT LPKREEVKPK QITVEVT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.20758866613061	bayes_pls_golite062009
catalytic activity	0.63074808892513	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: