YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995461, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995461, gi|....

Description	E-value	Query Range	Subject Range
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	165.0	[0..21]	[170..1]
gi\|84512778, gi\|... - gi\|84518029\|ref\|ZP_01005378.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9211], gi\|84...	163.0	[0..18]	[169..2]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	160.0	[0..22]	[169..7]
gi\|78221407, gi\|... - gi\|78221407\|ref\|YP_383154.1\| thiol peroxidase (atypical 2-Cys peroxiredoxin) [Geobacter metallireduc...	160.0	[0..1]	[171..1]
gi\|116070595, gi... - gi\|116070595\|ref\|ZP_01467864.1\| thioredoxin peroxidase [Synechococcus sp. BL107], gi\|116066000\|gb\|EA...	160.0	[0..22]	[169..7]
gi\|116068112, gi... - gi\|116074890\|ref\|ZP_01472151.1\| thioredoxin peroxidase [Synechococcus sp. RS9916], gi\|116068112\|gb\|E...	160.0	[0..15]	[169..1]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	160.0	[0..17]	[169..2]
gi\|78184723, gi\|... - gi\|78184723\|ref\|YP_377158.1\| thioredoxin peroxidase [Synechococcus sp. CC9902], gi\|78169017\|gb\|ABB26...	159.0	[0..22]	[169..10]
gi\|86167507, gi\|... - gi\|87124628\|ref\|ZP_01080476.1\| thioredoxin peroxidase [Synechococcus sp. RS9917], gi\|86167507\|gb\|EAQ...	159.0	[0..17]	[169..2]
gi\|19698783 - gi\|19698783\|gb\|AAL91102.1\| thiredoxin peroxidase [Acanthocheilonema viteae]	158.0	[0..15]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERTGIITF KGNPMTLLGP QLKVGDQAPA FTAVDTSLTV RSLSDFGAAI KIISAVPSLD  60
   61 TPVCDAETRR FNQEAASLPA NVVLLTISLD LPFAQKRWCG AAGIDRVVTL SDYRDRSFGL 120
  121 AYGVLIKELM LLSRSVFVVD GNGVIRYLQH VPEVTSEPDY AAVLDSVRAM L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1psqA
Description:	Probable thiol peroxidase PsaD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.26520127994042	bayes_pls_golite062009
peroxidase activity	2.96616905270619	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	2.96616905270619	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
glutathione peroxidase activity	1.84498211544043	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.66635539173786	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.30736808247405	bayes_pls_golite062009
oxidoreductase activity	1.23883481884618	bayes_pls_golite062009
disulfide oxidoreductase activity	1.14955061683324	bayes_pls_golite062009
selenium binding	0.422666385408905	bayes_pls_golite062009
catalytic activity	0.129588295266429	bayes_pls_golite062009
binding	0.064243103392096	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: