YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982173, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982173, gi|....

Description	E-value	Query Range	Subject Range
gi\|2634555, gi\|1... - gi\|2634555\|emb\|CAB14053.1\| yomI [Bacillus subtilis subsp. subtilis str. 168], gi\|16079194\|ref\|NP_390... gi\|81342088 - gi\|81342088\|sp\|O31976.1\|YOMI_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized transglycosy... TMP_BPSPB - Probable tape measure protein OS=Bacillus phage SPbeta GN=yomI PE=3 SV=1	169.0	[0..49]	[192..1397]
gi\|78224453, gi\|... - gi\|78224453\|ref\|YP_386200.1\| lytic transglycosylase, catalytic [Geobacter metallireducens GS-15], gi...	167.0	[0..1]	[196..1]
gi\|56910531, gi\|... - gi\|56964288\|ref\|YP_176019.1\| lytic transglycosylase [Bacillus clausii KSM-K16], gi\|56910531\|dbj\|BAD6...	160.0	[0..31]	[196..61]
gi\|25493281 - pir\|\|D84006 lytic transglycosylase BH2852 [imported] - Bacillus halodurans (strain C-125) gi\|10175473, gi\|... - gi\|15615415\|ref\|NP_243718.1\| lytic transglycosylase [Bacillus halodurans C-125], gi\|10175473\|dbj\|BAB...	159.0	[0..28]	[192..62]
gi\|89098118, gi\|... - gi\|89098118\|ref\|ZP_01171004.1\| YjbJ [Bacillus sp. NRRL B-14911], gi\|89087281\|gb\|EAR66396.1\| YjbJ [Ba...	157.0	[0..1]	[188..10]
gi\|196253527, gi... - gi\|196253527\|ref\|ZP_03152151.1\| Lytic transglycosylase catalytic [Clostridium thermocellum DSM 4150]... gi\|125715451, gi... - gi\|67876183\|ref\|ZP_00505142.1\| SLT domain [Clostridium thermocellum ATCC 27405], gi\|67850223\|gb\|EAM4...	155.0	[0..32]	[196..61]
gi\|54307844, gi\|... - gi\|54307844\|ref\|YP_128864.1\| soluble lytic murein transglycosylase [Photobacterium profundum SS9], g...	153.0	[0..10]	[196..413]
gi\|23099593, gi\|... - gi\|23099593\|ref\|NP_693059.1\| lytic transglycosylase [Oceanobacillus iheyensis HTE831], gi\|22777823\|d...	153.0	[0..14]	[189..46]
gi\|146399927, gi... - gi\|88935801\|ref\|ZP_01141426.1\| similar to Soluble lytic murein transglycosylase and related regulato...	152.0	[0..1]	[196..60]
gi\|222056902, gi... - gi\|222056902\|ref\|YP_002539264.1\| Lytic transglycosylase catalytic [Geobacter sp. FRC-32], gi\|2215661...	151.0	[0..1]	[196..60]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLDMMRSAF SLGDTAGETP RPVGAQAMEF ILKSFAQNRG EVTGADAAQA EVGAPADVSA  60
   61 AEVSSTGPRD AGWLEDVIQR ASRRYGVEVG LIKAVIKAES NFNPNAVSHA GAQGLMQLMP 120
  121 ATARGLGVTD SFDPEQNVMA GTRFLKDLLK RYGGDIDKTL AAYNWGPGNV DRKPHLLPRE 180
  181 TRDYLVKVKE YYSQFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: