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View Structure Prediction Details

Protein: gi|39981981, gi|...
Organism: Geobacter sulfurreducens PCA
Length: 141 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39981981, gi|....

Description E-value Query
Range		 Subject
Range
gi|69215356 - gi|69215356|gb|AAZ03830.1| ATP synthase CF0 B chain [Ginkgo biloba]
 107.0 [0..2] [141..20]
ATPF_AMBTC - ATP synthase subunit b, chloroplastic OS=Amborella trichopoda GN=atpF PE=3 SV=1
 107.0 [0..2] [141..20]
gi|82754615 - gi|82754615|gb|ABB90029.1| ATP synthase CF0 B chain [Solanum tuberosum]
 107.0 [0..2] [141..20]
ATPF_EUCGG - ATP synthase subunit b, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpF PE=3 SV=1
 107.0 [0..2] [141..20]
ATPF_LIRTU - ATP synthase subunit b, chloroplastic OS=Liriodendron tulipifera GN=atpF PE=3 SV=1
 106.0 [0..2] [140..20]
ATPF_SPIOL - ATP synthase subunit b, chloroplastic OS=Spinacia oleracea GN=atpF PE=3 SV=1
 106.0 [0..2] [141..20]
ATPF_MORIN - ATP synthase subunit b, chloroplastic OS=Morus indica GN=atpF PE=3 SV=1
 106.0 [0..2] [141..20]
ATPF_PLAOC - ATP synthase subunit b, chloroplastic OS=Platanus occidentalis GN=atpF PE=3 SV=1
 106.0 [0..2] [141..20]
ATPF_VITVI - ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1
 106.0 [0..2] [141..20]
ATPF_ACOCL - ATP synthase subunit b, chloroplastic OS=Acorus calamus GN=atpF PE=3 SV=1
gi|69215354, gi|... - gi|69215354|gb|AAZ03829.1| ATP synthase CF0 B chain [Acorus americanus], gi|161622296|ref|YP_0015861...
 106.0 [0..2] [141..20]

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Predicted Domain #1
Region A:
Residues: [1-141] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLDLAFVI QVINFLVLMI ILNVFLFKPI RKVIADRKAQ IDGSRERAAV VDKEVQEKMA  60
   61 LYEARLRDVK AKAGAEREVL RKEAQQEESA ILEKARKEAA DSLASIKSRV AKETVDAKEF 120
  121 LKEQSRSLSL EICQKVLGRS L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 1l2pA
Description: F1F0 ATP synthase subunit B, membrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 13.4958765229456 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 11.6977167590263 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 9.95066935525283 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 8.85439283401521 bayes_pls_golite062009
cation transmembrane transporter activity 5.13805155650973 bayes_pls_golite062009
ion transmembrane transporter activity 5.04374327766634 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.64120459994573 bayes_pls_golite062009
transporter activity 2.93091397928047 bayes_pls_golite062009
transmembrane transporter activity 2.82224868778929 bayes_pls_golite062009
substrate-specific transporter activity 2.79688978937497 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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