YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995184, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995184, gi|....

Description	E-value	Query Range	Subject Range
gi\|237707059, gi... - gi\|237707059\|ref\|ZP_04537540.1\| outer membrane protein A [Escherichia sp. 3_2_53FAA], gi\|226898269\|g... gi\|91210052, gi\|... - gi\|91210052\|ref\|YP_540038.1\| outer membrane protein A [Escherichia coli UTI89], gi\|91071626\|gb\|ABE06...	170.0	[0..1]	[197..30]
gi\|117623167, gi... - gi\|117623167\|ref\|YP_852080.1\| outer membrane protein A [Escherichia coli APEC O1], gi\|115512291\|gb\|A...	169.0	[0..1]	[197..25]
gi\|26107378, gi\|... - gi\|26246978\|ref\|NP_753018.1\| outer membrane protein A [Escherichia coli CFT073], gi\|26107378\|gb\|AAN7...	169.0	[0..1]	[197..30]
gi\|46812309 - gi\|46812309\|gb\|AAT02227.1\| outer membrane protein A precursor [Shigella boydii]	167.0	[0..1]	[197..1]
gi\|110342738, gi... - gi\|110641146\|ref\|YP_668876.1\| outer membrane protein A [Escherichia coli 536], gi\|110342738\|gb\|ABG68...	167.0	[0..1]	[197..1]
gi\|74311514, gi\|... - gi\|74311514\|ref\|YP_309933.1\| outer membrane protein A [Shigella sonnei Ss046], gi\|73854991\|gb\|AAZ876... gi\|254792157, gi... - gi\|254792157\|ref\|YP_003076994.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli O157:H7 str... gi\|75195146, gi\|... - gi\|75195146\|ref\|ZP_00705216.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|170080615, gi... - gi\|170080615\|ref\|YP_001729935.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli str. K-12 s... gi\|188493530, gi... - gi\|75513410\|ref\|ZP_00735814.1\| COG2885: Outer membrane protein and related peptidoglycan-associated ... gi\|187730326, gi... - gi\|187730326\|ref\|YP_001880845.1\| outer membrane protein A [Shigella boydii CDC 3083-94], gi\|18742731... gi\|209911468, gi... - gi\|209918209\|ref\|YP_002292293.1\| outer membrane protein A [Escherichia coli SE11], gi\|209911468\|dbj\|... gi\|218351164, gi... - gi\|218694432\|ref\|YP_002402099.1\| outer membrane protein A [Escherichia coli 55989], gi\|218351164\|emb... OMPA_ECOLI - Outer membrane protein A precursor (Outer membrane protein II) - Escherichia coli gi\|32329155 - gi\|32329155\|gb\|AAP74759.1\| outer membrane protein A precursor [Shigella sonnei] OMPA_ECO57 - Outer membrane protein A OS=Escherichia coli O157:H7 GN=ompA PE=3 SV=1 EG10669 - outer membrane protein A (3a;II;G;d) / Outer membrane protein A; Outer membrane porin A; T-even pha... gi\|15800816, gi\|... - gi\|15800816\|ref\|NP_286832.1\| outer membrane protein A [Escherichia coli O157:H7 EDL933], gi\|12514142... gi\|1651465, gi\|8... - gi\|89107807\|ref\|AP_001587.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli str. K-12 subst... EG10669 - outer membrane protein A (3a;II;G;d) / Outer membrane protein A; Outer membrane porin A; T-even pha... gi\|13360501, gi\|... - gi\|15830295\|ref\|NP_309068.1\| outer membrane protein A [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|238900215, gi... - gi\|238900215\|ref\|YP_002926011.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BW2952], gi... gi\|242376772, gi... - gi\|251784499\|ref\|YP_002998803.1\| hypothetical protein B21_00968 [Escherichia coli BL21], gi\|24237677... gi\|253325058, gi... - gi\|254287879\|ref\|YP_003053627.1\| outer membrane protein A (3a;II;G;d) [Escherichia coli BL21(DE3)],... gi\|253972972, gi... - gi\|254161071\|ref\|YP_003044179.1\| outer membrane protein A (3a;II*;G;d) [Escherichia coli B str. REL6...	166.0	[0..1]	[197..1]
gi\|51235578 - gi\|51235578\|gb\|AAT98590.1\| outer membrane protein A [Escherichia coli]	166.0	[0..1]	[197..1]
gi\|56413933, gi\|... - gi\|56413933\|ref\|YP_151008.1\| outer membrane protein A [Salmonella enterica subsp. enterica serovar P... gi\|197362856, gi... - gi\|197362856\|ref\|YP_002142493.1\| outer membrane protein A [Salmonella enterica subsp. enterica serov...	165.0	[0..1]	[197..1]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLIALLCL TLTVAAGSGT ALAENIKGRL GITGKIGFYL PGDSDFDNYK LETDAGFLGG  60
   61 GGLIYGVTDN LAAEVDVTYT KFGAELVSGL DQGDFSVTNI AMGVQYRFDT PQPKLSPYAG 120
  121 GGIDILISDY DRPGGADVDP TVGVHLCGGL DYFLTKHLVL NAEVRGVVAP EVDIDAPGGK 180
  181 SGNFDPSGVA ATFGVRLFFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	1bxwA
Description:	Outer membrane protein A (OMPA) transmembrane domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
wide pore channel activity	2.56764837317779	bayes_pls_golite062009
porin activity	2.40336729430689	bayes_pls_golite062009
channel activity	0.500502774665998	bayes_pls_golite062009
passive transmembrane transporter activity	0.500502774665998	bayes_pls_golite062009
transporter activity	0.32956132877646	bayes_pls_golite062009
transmembrane transporter activity	0.31625101261287	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: