YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOB_COXBU
Organism:	Coxiella burnetii RSA 493
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOB_COXBU.

Description	E-value	Query Range	Subject Range
NUOB_RICB8 - NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain OSU 85-389) GN=nuoB PE=3 SV=1	235.0	[0..1]	[159..12]
NUOB1_RHOSK - NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=nu... NUOB1_RHOS4, NUO... - NADH-quinone oxidoreductase subunit B OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8...	234.0	[0..1]	[158..18]
NUOB1_RHOS1 - NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) G... NUOB1_RHOS4 - NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB...	233.0	[0..1]	[158..20]
NDUS7_RECAM - NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1	233.0	[0..1]	[154..22]
gi\|114764719, gi... - gi\|114764719\|ref\|ZP_01443904.1\| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601], gi\|11454...	233.0	[0..1]	[158..50]
gi\|51873813, gi\|... - gi\|51873813\|gb\|AAH78494.1\| MGC85267 protein [Xenopus laevis], gi\|147902669\|ref\|NP_001087274.1\| MGC85...	232.0	[0..6]	[156..62]
NUOB_RICBR - NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain RML369-C) GN=nuoB PE=3 SV=1	232.0	[0..1]	[159..12]
NUOB_RICFE - NADH-quinone oxidoreductase subunit B OS=Rickettsia felis GN=nuoB PE=3 SV=1 NUOB_RICFE - NADH-quinone oxidoreductase subunit B OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=nuoB ...	232.0	[0..1]	[157..12]
gi\|113197754, gi... - gi\|118404166\|ref\|NP_001072396.1\| hypothetical protein LOC779850 [Xenopus (Silurana) tropicalis], gi\|...	231.0	[0..6]	[156..62]
NDUS7_MOUSE - NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 ...	231.0	[0..8]	[157..71]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQLLTKEGF LLTSLDDLMR WARSGSLWPM TFGLACCAVE MMQCASSRYD LDRFGAGLFR  60
   61 PSPRQSDVMI VAGTLCNKMA PALRKVYDQM AEPRWVISMG SCANGGGYYH YAYSVVRGCD 120
  121 RIVPVDVYVP GCPPTAEALF YGIMQLRNKI RYRNIFDRKD A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.221849
Match:	2fug6
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	6.8419158179039	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	6.65949892399481	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	6.46155212492129	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	6.2178143146395	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.76455755583616	bayes_pls_golite062009
oxidoreductase activity	2.66146298873621	bayes_pls_golite062009
catalytic activity	1.78400897294986	bayes_pls_golite062009
binding	0.246886150183413	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: