YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29541741, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29541741, gi|....

Description	E-value	Query Range	Subject Range
gi\|46371976 - gi\|46371976\|gb\|AAS90623.1\| putative low molecular weight heat shock protein [uncultured soil bacteri...	145.0	[0..3]	[149..2]
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	145.0	[0..1]	[149..247]
HS17A_ORYSJ - 17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1 HSP23_ORYSA - 17.4 kDa class I heat shock protein 3 - Oryza sativa (Rice) gi\|125543232 - gi\|125543232\|gb\|EAY89371.1\| hypothetical protein OsI_10878 [Oryza sativa Indica Group]	144.0	[0..1]	[149..1]
gi\|77954323, gi\|... - gi\|77954323\|ref\|ZP_00818719.1\| similar to low molecular weight heat shock protein (Hsp17) [Marinobac...	143.0	[0..1]	[150..1]
gi\|83701135 - gi\|83701135\|gb\|ABC41131.1\| 17.3 kDa class I heat shock protein [Arachis hypogaea]	141.0	[0..1]	[149..1]
gi\|85777278, gi\|... - gi\|86160767\|ref\|YP_467552.1\| heat shock protein Hsp20 [Anaeromyxobacter dehalogenans 2CP-C], gi\|8577...	141.0	[0..1]	[149..1]
gi\|170175859, gi... - gi\|170288356\|ref\|YP_001738594.1\| heat shock protein Hsp20 [Thermotoga sp. RQ2], gi\|170175859\|gb\|ACB0... gi\|4980878, gi\|1... - gi\|4980878\|gb\|AAD35461.1\|AE001717_7 heat shock protein, class I [Thermotoga maritima MSB8], gi\|15643... gi\|7441335 - pir\|\|D72385 heat shock protein, class I - Thermotoga maritima (strain MSB8)	140.0	[0..1]	[151..1]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	140.0	[0..5]	[149..11]
gi\|106891964, gi... - gi\|148654378\|ref\|YP_001274583.1\| heat shock protein Hsp20 [Roseiflexus sp. RS-1], gi\|148566488\|gb\|AB...	139.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAVQKYPH SMLSHLQQDI NRLFEPFGWA TGGELWDAFS SEWSPHIDIK DEGQNYLICA  60
   61 DIPGVDPKKI QVSMENNILT IKGERETEAK EKSEGYLRIE RTKGAFLRQF TLPESVDAES 120
  121 IKAKSKHGVL EITIPKAQPP RTKKIEIEEQ E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.54721252992048	bayes_pls_golite062009
protein binding	0.643437066451821	bayes_pls_golite062009
catalytic activity	0.260308151913118	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: