YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29654092, gi\|...
Organism:	Coxiella burnetii RSA 493
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29654092, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	163.0	[0..5]	[124..100]
gi\|110801119, gi... - gi\|110801119\|ref\|YP_695076.1\| DNA-binding response regulator [Clostridium perfringens ATCC 13124], g...	163.0	[0..7]	[124..1]
gi\|18144301, gi\|... - gi\|18309624\|ref\|NP_561558.1\| DNA-binding response regulator [Clostridium perfringens str. 13], gi\|18...	162.0	[0..7]	[124..1]
gi\|110682378, gi... - gi\|110801877\|ref\|YP_697936.1\| DNA-binding response regulator [Clostridium perfringens SM101], gi\|110...	162.0	[0..7]	[124..1]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	161.0	[0..7]	[124..1]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	160.0	[0..7]	[124..1]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	160.0	[0..7]	[124..1]
gi\|152023577, gi... - gi\|89200931\|ref\|ZP_01179680.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	159.0	[0..7]	[124..1]
gi\|49477181, gi\|... - gi\|49477181\|ref\|YP_035526.1\| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27...	159.0	[0..7]	[124..1]
gi\|47501725, gi\|... - gi\|47526577\|ref\|YP_017926.1\| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'... gi\|30255255, gi\|... - gi\|30261401\|ref\|NP_843778.1\| DNA-binding response regulator [Bacillus anthracis str. Ames], gi\|30255... gi\|21399213, gi\|... - gi\|65318666\|ref\|ZP_00391625.1\| COG0745: Response regulators consisting of a CheY-like receiver domai... gi\|227815860, gi... - gi\|227815860\|ref\|YP_002815869.1\| DNA-binding response regulator [Bacillus anthracis str. CDC 684], g... gi\|229604024, gi... - gi\|229604024\|ref\|YP_002865817.1\| DNA-binding response regulator [Bacillus anthracis str. A0248], gi\|... gi\|254682541 - gi\|254682541\|ref\|ZP_05146402.1\| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi\|167530313, gi... - gi\|167634425\|ref\|ZP_02392746.1\| DNA-binding response regulator [Bacillus anthracis str. A0442], gi\|1... gi\|254733959 - gi\|254733959\|ref\|ZP_05191673.1\| DNA-binding response regulator [Bacillus anthracis str. Western Nort... gi\|254740353 - gi\|254740353\|ref\|ZP_05198044.1\| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi\|170686885, gi... - gi\|170686885\|ref\|ZP_02878105.1\| DNA-binding response regulator [Bacillus anthracis str. A0465], gi\|1... gi\|254753741 - gi\|254753741\|ref\|ZP_05205776.1\| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi\|49184231, gi\|... - gi\|49184231\|ref\|YP_027483.1\| DNA-binding response regulator [Bacillus anthracis str. Sterne], gi\|491... gi\|167639277, gi... - gi\|167639277\|ref\|ZP_02397549.1\| DNA-binding response regulator [Bacillus anthracis str. A0193], gi\|1... gi\|254758837 - gi\|254758837\|ref\|ZP_05210864.1\| DNA-binding response regulator [Bacillus anthracis str. Australia 94... gi\|172082668, gi... - gi\|177651390\|ref\|ZP_02934179.1\| DNA-binding response regulator [Bacillus anthracis str. A0174], gi\|1... gi\|170706300, gi... - gi\|170706300\|ref\|ZP_02896761.1\| DNA-binding response regulator [Bacillus anthracis str. A0389], gi\|1...	159.0	[0..7]	[124..1]

Back

Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITKKPIKKP LILLVEDNPF IQKIHVQLLK KLNCEVTLAI DGQSALALYS DKFDLIFLDI  60
   61 NLSDMNGMEV CKAIRQRTSS TPIIALTSES SKNKPRYFST GINDFIKKPT TQAALKRVLN 120
  121 YWIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1mvoA
Description:	PhoP receiver domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
two-component response regulator activity	7.02872640261738	bayes_pls_golite062009
signal transducer activity	4.51666042720644	bayes_pls_golite062009
molecular transducer activity	4.51666042720644	bayes_pls_golite062009
transcription regulator activity	3.44888100104099	bayes_pls_golite062009
protein histidine kinase activity	2.35011582062573	bayes_pls_golite062009
two-component sensor activity	2.32303301074957	bayes_pls_golite062009
phosphotransferase activity, nitrogenous group as acceptor	2.28838869071567	bayes_pls_golite062009
binding	1.22427537074115	bayes_pls_golite062009
DNA binding	1.11037597107903	bayes_pls_golite062009
nucleic acid binding	0.93151849951839	bayes_pls_golite062009
transcription factor activity	0.62886970109503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: