YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24351247, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24351247, gi|....

Description	E-value	Query Range	Subject Range
gi\|90416699\|ref\|... - molybdenum cofactor biosynthesis protein A [marine gamma proteobacterium HTCC2207] gi\|90416699, gi\|... - gi\|90416699\|ref\|ZP_01224629.1\| molybdenum cofactor biosynthesis protein A [marine gamma proteobacter...	259.0	[0..2]	[327..10]
gi\|119773261, gi... - gi\|68545372\|ref\|ZP_00584923.1\| Radical SAM:Molybdenum cofactor synthesis C [Shewanella amazonensis S...	257.0	[0..1]	[327..1]
gi\|78507866, gi\|... - gi\|78684534\|ref\|ZP_00849318.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. ANA-3], gi\|78507866\|gb\|...	255.0	[0..1]	[327..1]
gi\|113972206, gi... - gi\|82496156\|ref\|ZP_00881726.1\| Elongator protein 3/MiaB/NifB [Shewanella sp. MR-4], gi\|82405730\|gb\|E...	254.0	[0..1]	[327..1]
gi\|113890898, gi... - gi\|114049456\|ref\|YP_740006.1\| molybdenum cofactor biosynthesis protein A [Shewanella sp. MR-7], gi\|1...	253.0	[0..1]	[327..1]
gi\|77954214, gi\|... - gi\|77954214\|ref\|ZP_00818612.1\| Elongator protein 3/MiaB/NifB [Marinobacter aquaeolei VT8], gi\|778668...	253.0	[0..1]	[327..38]
gi\|32041552, gi\|... - gi\|32041552\|ref\|ZP_00139135.1\| COG2896: Molybdenum cofactor biosynthesis enzyme [Pseudomonas aerugin...	253.0	[0..2]	[327..4]
gi\|71847249, gi\|... - gi\|71907628\|ref\|YP_285215.1\| radical SAM:molybdenum cofactor synthesis C-terminal [Dechloromonas aro...	253.0	[0..4]	[327..34]
gi\|49087864 - gi\|49087864\|gb\|AAT51506.1\| PA1505 [synthetic construct]	253.0	[0..2]	[327..4]
gi\|107100939 - gi\|107100939\|ref\|ZP_01364857.1\| hypothetical protein PaerPA_01001969 [Pseudomonas aeruginosa PACS2] MOAA2_PSEAE - Cyclic pyranopterin monophosphate synthase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1... gi\|218892620, gi... - gi\|218892620\|ref\|YP_002441489.1\| molybdenum cofactor biosynthesis protein A [Pseudomonas aeruginosa ... MOAA2_PSEAE, MOA... - Molybdenum cofactor biosynthesis protein A 2 OS=Pseudomonas aeruginosa GN=moaA2 PE=3 SV=1, (Q9I3K7) ... gi\|126166532, gi... - gi\|84321694\|ref\|ZP_00970048.1\| COG2896: Molybdenum cofactor biosynthesis enzyme [Pseudomonas aerugin...	253.0	[0..2]	[327..4]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLVDAFGR QVEYLRLSVT DRCDFRCVYC MTEEPCFLPK DHVLHLEELA WIAQAFTELG  60
   61 VTKIRLTGGE PLVRSDCDQL VNLLGKLPGL KDLSMTTNGS RLSKFAKPMF DAGLKRLNIS 120
  121 LDTLNPALFT QLTRNGKLAR VIEGIDAAIA AGFTRIKINA VILKQQNDHE IIDLVNFCRD 180
  181 RNLDIAFIEE MPLGEMDERK RARHCSSDEV KAMISEHYPL QLSNKRTGGP ARYYTMADSP 240
  241 IHIGFISPHS HNFCHECNRV RVTVEGQLLL CLGNEHSIDL KSIIREFPGD IERLKTAILQ 300
  301 GIKRKPKQHV FDNNEVQILR FMNTTGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.221849
Match:	1tv7A
Description:	Structure of the S-adenosylmethionine dependent Enzyme MoaA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.85375915825216	bayes_pls_golite062009
biotin synthase activity	1.62334351678868	bayes_pls_golite062009
radical SAM enzyme activity	1.4803934989213	bayes_pls_golite062009
sulfurtransferase activity	1.26112752511053	bayes_pls_golite062009
coproporphyrinogen oxidase activity	1.25473129160872	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	0.548175475004449	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.35292941647096	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: