YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24376146, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24376146, gi|....

Description	E-value	Query Range	Subject Range
gi\|85695191, gi\|... - gi\|85710787\|ref\|ZP_01041848.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Idiomarina baltica OS145], ...	323.0	[0..2]	[397..1]
gi\|56178391, gi\|... - gi\|56459381\|ref\|YP_154662.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Idiomarina loihiensis L2TR], ...	315.0	[0..2]	[397..1]
gi\|154357033, gi... - gi\|94492478\|ref\|ZP_01299685.1\| hypothetical protein CburD_01000055 [Coxiella burnetii Dugway 7E9-12]... gi\|95927705, gi\|... - gi\|95927705\|ref\|ZP_01310459.1\| hypothetical protein CburR_01000469 [Coxiella burnetii RSA 331], gi\|1... gi\|165917892, gi... - gi\|165918386\|ref\|ZP_02218472.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Coxiella burnetii RSA 334]... gi\|212011768, gi... - gi\|212213358\|ref\|YP_002304294.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Coxiella burnetii CbuG_Q2... gi\|29653469, gi\|... - gi\|29653469\|ref\|NP_819161.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Coxiella burnetii RSA 493], g...	313.0	[0..8]	[397..6]
gi\|78366086, gi\|... - gi\|78366086\|ref\|ZP_00836369.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella sp. PV-4], gi\|78...	310.0	[0..1]	[397..1]
gi\|119765740, gi... - gi\|68545352\|ref\|ZP_00584903.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella amazonensis SB2B...	306.0	[0..1]	[397..1]
gi\|68521173, gi\|... - gi\|68541028\|ref\|ZP_00580775.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella baltica OS155], ... gi\|153002836, gi... - gi\|153002836\|ref\|YP_001368517.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella baltica OS185]...	305.0	[0..1]	[397..1]
gi\|124548586, gi... - gi\|124548586\|ref\|ZP_01707206.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella putrefaciens 20... gi\|146294982, gi... - gi\|77816023\|ref\|ZP_00815233.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella putrefaciens CN-...	305.0	[0..1]	[397..1]
gi\|69942461, gi\|... - gi\|91794962\|ref\|YP_564613.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella denitrificans OS21...	305.0	[0..1]	[397..1]
gi\|113949292, gi... - gi\|160877581\|ref\|YP_001556897.1\| 2-amino-3-ketobutyrate coenzyme A ligase [Shewanella baltica OS195]...	304.0	[0..1]	[397..1]
BIOF_THEPX - 8-amino-7-oxononanoate synthase OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_0779 PE=3 SV=1 gi\|242258126, gi... - gi\|242258126\|ref\|ZP_04802958.1\| pyridoxal phosphate-dependent acyltransferase [Thermoanaerobacter sp...	304.0	[0..1]	[397..1]

Back

Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSFYAQI NQQLADVKAE GLYKSERIIA SPQQTAIQVN HQEVVNFCAN NYLGLANHPE  60
   61 LIKAAQQGLD SHGFGMASVR FICGTQDIHK QLEASLSEFL GMEDTILYSS CFDANAGLFE 120
  121 TLLDAEDAII SDALNHASII DGVRLCKAKR FRYANNDMAD LETQLIAAKA AGARNILIAT 180
  181 DGVFSMDGVI ANLQGVCDLA DKYGALVMVD DSHAVGFVGQ NGRGSHEHCG VMGRVDIITG 240
  241 TLGKALGGAS GGFTSGKKEV IDWLRQRSRP YLFSNSLAPS IVTASIHVLE MLKSGQALRE 300
  301 SVWENSRYFR EKMSAAGFTL GGADHAIIPV MIGDAKLASD FANRLLAEHI YVIGFSFPVV 360
  361 PKGQARIRTQ MSAAHTREQL DKAIEAFTRI AKEMAII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.045757
Match:	1fc4A
Description:	2-amino-3-ketobutyrate CoA ligase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
5-aminolevulinate synthase activity	3.15163480353521	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	2.82458180884712	bayes_pls_golite062009
catalytic activity	2.29878871754893	bayes_pls_golite062009
N-succinyltransferase activity	1.81799375593294	bayes_pls_golite062009
threonine aldolase activity	1.80396420390785	bayes_pls_golite062009
adenosylmethionine-8-amino-7-oxononanoate transaminase activity	1.74778109525713	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.63055151623667	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.63055151623667	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
glycine C-acetyltransferase activity	0.935794708043259	bayes_pls_golite062009
transferase activity	0.737426388870721	bayes_pls_golite062009
carbon-sulfur lyase activity	0.698312655247044	bayes_pls_golite062009
intramolecular transferase activity, transferring amino groups	0.659071155545801	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.319452731970428	bayes_pls_golite062009
cystathionine beta-lyase activity	0.15938456446406	bayes_pls_golite062009
sulfurtransferase activity	0.0450490929307473	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: