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View Structure Prediction Details

Protein: gi|24375855, gi|...
Organism: Shewanella oneidensis MR-1
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375855, gi|....

Description E-value Query
Range		 Subject
Range
PALY_POPTR - Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1
gi|169454, gi|541843 - gi|541843|pir||JQ2265 phenylalanine ammonia-lyase (EC 4.3.1.5) - western balsam poplar x cottonwood,...
 700.0 [0..1] [511..42]
gi|34541972 - gi|34541972|gb|AAQ74878.1| phenylalanine ammonia lyase [Populus balsamifera subsp. trichocarpa x Pop...
 700.0 [0..2] [511..34]
gi|14486430 - gi|14486430|gb|AAK62030.1| phenylalanine ammonia-lyase 1 [Manihot esculenta]
 699.0 [0..2] [511..33]
gi|7798554 - gi|7798554|dbj|BAA95629.1| phenylalanine ammonia lyase [Catharanthus roseus]
 698.0 [0..1] [511..43]
gi|71277049 - gi|71277049|gb|AAZ29735.1| phenylalanine ammonia lyase [Trifolium pratense]
 696.0 [0..2] [511..49]
PAL1_PRUAV - Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1
 696.0 [0..1] [511..45]
PALY_CITLI - Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1
 696.0 [0..2] [511..43]
gi|18001007 - gi|18001007|gb|AAL55242.1|AF299330_1 phenylalanine ammonia-lyase [Lactuca sativa]
 695.0 [0..1] [511..37]
gi|92887740 - gi|92887740|gb|ABE89023.1| Phenylalanine/histidine ammonia-lyase [Medicago truncatula]
 695.0 [0..2] [511..35]

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Predicted Domain #1
Region A:
Residues: [1-521] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHVVTQTTT VESPIEFGRQ LLTLEQVVAV AKGAKVKLCD DADYQEYIQK GARFIDSLLH  60
   61 EEGVVYGVTT GYGDSCTVNV SLDLVHELPL HLSRFHGCGL GEVLSVMQAR AVMACRLNSL 120
  121 AIGKSGVTYE LLKRIQTLLN LNIVPVIPEE GSVGASGDLT PLSYLAAVLV GEREVIYQGE 180
  181 RRATKEVYHE LNITPHVLRP KEGLALMNGT AVMTALACLA FDRAQYLARL ASRITAMASL 240
  241 TLKGNSNHFD DILFAAKPHP GQNQIATWIR EDLNHHVHPR NSDRLQDRYS IRCAPHIIGV 300
  301 LQDALPFMRQ FIETEVNSAN DNPIVDAEGE HILHGGHFYG GHIAFAMDSL KNIVANIADL 360
  361 IDRQMALVMD PKFNNGLPAN LSGSTGPRRA INHGFKAVQI GVSAWTAEAL KHTMPASVFS 420
  421 RSTECHNQDK VSMGTIAARD CMRVLQLTEQ VAAAALLAMT QGIDLRITQN ELDEASLTPS 480
  481 LATTLAQVRA DFEPLVEDRP LEAVLRQTVA KIQAGEWEVC R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1w27A
Description: Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
histidine ammonia-lyase activity 3.53226750625841 bayes_pls_golite062009
catalytic activity 2.51282259572665 bayes_pls_golite062009
lyase activity 2.31268471569846 bayes_pls_golite062009
carbon-nitrogen lyase activity 2.2046475419807 bayes_pls_golite062009
amidine-lyase activity 0.901614580251298 bayes_pls_golite062009
argininosuccinate lyase activity 0.617974375213548 bayes_pls_golite062009
ammonia-lyase activity 0.491229595527877 bayes_pls_golite062009
fumarate hydratase activity 0.364320954362762 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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