YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24350585, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24350585, gi|....

Description	E-value	Query Range	Subject Range
gi\|146642 - gi\|146642\|gb\|AAA24078.1\| protease La (lon)	203.0	[0..4]	[191..9]
gi\|207743052, gi... - gi\|207743052\|ref\|YP_002259444.1\| atp-dependent protease la protein [Ralstonia solanacearum IPO1609],... gi\|207723584, gi... - gi\|207723584\|ref\|YP_002253983.1\| atp-dependent protease la protein [Ralstonia solanacearum MolK2], g... gi\|83745915, gi\|... - gi\|83745915\|ref\|ZP_00942972.1\| ATP-dependent protease LA [Ralstonia solanacearum UW551], gi\|83727605...	201.0	[0..2]	[191..10]
LON_SHIDS - Lon protease OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lon PE=3 SV=1	201.0	[0..4]	[191..9]
gi\|17428730 - gi\|17428730\|emb\|CAD15415.1\| probable atp-dependent protease la protein [Ralstonia solanacearum GMI10... gi\|17546432 - gi\|17546432\|ref\|NP_519834.1\| ATP-dependent protease LA protein [Ralstonia solanacearum GMI1000]	201.0	[0..2]	[191..10]
gi\|72118489, gi\|... - gi\|73541076\|ref\|YP_295596.1\| Lon-A peptidase [Ralstonia eutropha JMP134], gi\|72118489\|gb\|AAZ60752.1\|...	199.0	[0..2]	[191..10]
gi\|187427314, gi... - gi\|75177623\|ref\|ZP_00697704.1\| COG0466: ATP-dependent Lon protease, bacterial type [Shigella boydii ... gi\|82542927, gi\|... - gi\|82542927\|ref\|YP_406874.1\| DNA-binding ATP-dependent protease La [Shigella boydii Sb227], gi\|81244...	199.0	[0..4]	[191..9]
gi\|189362422, gi... - gi\|189362422\|gb\|EDU80841.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|25289966 - pir\|\|E90690 endopeptidase La [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) gi\|195940566 - gi\|195940566\|ref\|ZP_03085948.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str.... gi\|13359950, gi\|... - gi\|15829747\|ref\|NP_308520.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str. Sa... gi\|254791623, gi... - gi\|254791623\|ref\|YP_003076460.1\| DNA-binding ATP-dependent protease La [Escherichia coli O157:H7 str... gi\|13359950, gi\|... - gi\|15829747\|ref\|NP_308520.1\| endopeptidase La [Escherichia coli O157:H7], gi\|13359950\|dbj\|BAB33916.1... gi\|168754544, gi... - gi\|189357958\|gb\|EDU76377.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189369044, gi... - gi\|189369044\|gb\|EDU87460.1\| ATP-dependent protease La [Escherichia coli O157:H7 str. EC4501], gi\|168...	199.0	[0..4]	[191..9]
gi\|251783948, gi... - gi\|251783948\|ref\|YP_002998252.1\| hypothetical protein B21_00395 [Escherichia coli BL21], gi\|24237622... gi\|238860849, gi... - gi\|238899727\|ref\|YP_002925523.1\| DNA-binding ATP-dependent protease La [Escherichia coli BW2952], gi... gi\|215263592, gi... - gi\|215485520\|ref\|YP_002327951.1\| DNA-binding ATP-dependent protease La [Escherichia coli O127:H6 str... gi\|218553006, gi... - gi\|218553006\|ref\|YP_002385919.1\| DNA-binding ATP-dependent protease La [Escherichia coli IAI1], gi\|2... gi\|218693902, gi... - gi\|218693902\|ref\|YP_002401569.1\| DNA-binding ATP-dependent protease La [Escherichia coli 55989], gi\|... LON_ECOLI - ATP-dependent protease La (EC 3.4.21.53) - Escherichia coli gi\|218698649, gi... - gi\|218698649\|ref\|YP_002406278.1\| DNA-binding ATP-dependent protease La [Escherichia coli IAI39], gi\|... gi\|218703723, gi... - gi\|218703723\|ref\|YP_002411242.1\| DNA-binding ATP-dependent protease La [Escherichia coli UMN026], gi... LON_ECOL6 - Lon protease OS=Escherichia coli O6 GN=lon PE=2 SV=1 EG10542 - DNA-binding ATP-dependent protease La / DNA-binding, ATP-dependent protease LA; lon mutants form lon... gi\|73854491, gi\|... - gi\|74311014\|ref\|YP_309433.1\| DNA-binding ATP-dependent protease La [Shigella sonnei Ss046], gi\|73854... EG10542 - DNA-binding ATP-dependent protease La / DNA-binding, ATP-dependent protease LA; lon mutants form lon... gi\|85674579, gi\|... - gi\|89107309\|ref\|AP_001089.1\| DNA-binding ATP-dependent protease La [Escherichia coli str. K-12 subst... LON_ECOL6 - Lon protease OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lon PE=3 SV=1 gi\|157065646, gi... - gi\|75194660\|ref\|ZP_00704730.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|75209804 - gi\|75209804\|ref\|ZP_00710006.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|194437366, gi... - gi\|83587105\|ref\|ZP_00925735.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|75189508, gi\|... - gi\|75189508\|ref\|ZP_00702775.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|170021188, gi... - gi\|170021188\|ref\|YP_001726142.1\| DNA-binding ATP-dependent protease La [Escherichia coli ATCC 8739],... gi\|75239064, gi\|... - gi\|75239064\|ref\|ZP_00723046.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|110342292, gi... - gi\|110640700\|ref\|YP_668428.1\| DNA-binding ATP-dependent protease La [Escherichia coli 536], gi\|11034... gi\|169887860, gi... - gi\|170080025\|ref\|YP_001729345.1\| DNA-binding ATP-dependent protease La [Escherichia coli str. K-12 s... gi\|193064117, gi... - gi\|75257915\|ref\|ZP_00729393.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|170519957, gi... - gi\|170682239\|ref\|YP_001742583.1\| ATP-dependent protease La [Escherichia coli SMS-3-5], gi\|170519957\|... gi\|75226958 - gi\|75226958\|ref\|ZP_00713833.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|188494694, gi... - gi\|188494694\|ref\|ZP_03001964.1\| ATP-dependent protease La [Escherichia coli 53638], gi\|188489893\|gb\|... gi\|75238192 - gi\|75238192\|ref\|ZP_00722193.1\| COG0466: ATP-dependent Lon protease, bacterial type [Escherichia coli... gi\|209910915, gi... - gi\|209917656\|ref\|YP_002291740.1\| DNA-binding ATP-dependent protease La [Escherichia coli SE11], gi\|2... gi\|253972410, gi... - gi\|254160509\|ref\|YP_003043617.1\| DNA-binding ATP-dependent protease La [Escherichia coli B str. REL6... gi\|254287313, gi... - gi\|254287313\|ref\|YP_003053061.1\| DNA-binding ATP-dependent protease La [Escherichia coli BL21(DE3)],...	199.0	[0..4]	[191..9]
gi\|124498426, gi... - gi\|124531648\|ref\|ZP_01701836.1\| ATP-dependent protease La [Escherichia coli B], gi\|124498426\|gb\|EAY4... gi\|91209513, gi\|... - gi\|91209513\|ref\|YP_539499.1\| DNA-binding ATP-dependent protease La [Escherichia coli UTI89], gi\|9107... gi\|26246450, gi\|... - gi\|26246450\|ref\|NP_752489.1\| DNA-binding ATP-dependent protease La [Escherichia coli CFT073], gi\|261... gi\|227838636, gi... - gi\|227884550\|ref\|ZP_04002355.1\| DNA-binding ATP-dependent protease La [Escherichia coli 83972], gi\|2... gi\|209743834, gi... - gi\|209743840\|gb\|ACI70227.1\| endopeptidase La [Escherichia coli], gi\|209743834\|gb\|ACI70224.1\| endopep... gi\|237707566, gi... - gi\|237707566\|ref\|ZP_04538047.1\| DNA-binding ATP-dependent protease La [Escherichia sp. 3_2_53FAA], g...	199.0	[0..4]	[191..24]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTREMALIM RDALLLPQGR IEVRVVEPGQ LRMVADVLKG KYDLAFAAMK PSGNPPCYPT  60
   61 ATQCEIIDFN QLEDDTLSIV LEGRQRVSIL SAAQAKDKLW MSRTLPCQNW QEEPIKGEFE 120
  121 LISAALEQFY EVNPDLLELY SQVHLEDAAW VSQRWLEVLP MYNRDKLVLA NQPDCHKTMD 180
  181 FVLQLIKSHV D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1zboA
Description:	Crystal Structure of the Hypothetical Protein BPP1347 from Bordetella parapertussis, Northeast Structural Genomics Target BoR27.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.161174898429323	bayes_pls_golite062009
catalytic activity	0.147263815852997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: