YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375473, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375473, gi|....

Description	E-value	Query Range	Subject Range
gi\|28807726 - gi\|28807726\|dbj\|BAC60979.1\| aspartokinase III, lysine-sensitive [Vibrio parahaemolyticus RIMD 221063... gi\|28807726, gi\|... - gi\|28899490\|ref\|NP_799095.1\| aspartate kinase III [Vibrio parahaemolyticus RIMD 2210633], gi\|2880772...	367.0	[0..5]	[449..6]
gi\|75855203, gi\|... - gi\|75855203\|ref\|ZP_00762862.1\| COG0527: Aspartokinases [Vibrio sp. Ex25], gi\|116184643\|ref\|ZP_014745...	363.0	[0..5]	[449..6]
gi\|91225646, gi\|... - gi\|91225646\|ref\|ZP_01260720.1\| aspartate kinase III [Vibrio alginolyticus 12G01], gi\|91189766\|gb\|EAS...	361.0	[0..5]	[449..6]
gi\|146316014, gi... - gi\|227116796\|ref\|YP_002818692.1\| lysine-sensitive aspartokinase III [Vibrio cholerae O395], gi\|22701... gi\|227080602, gi... - gi\|227080602\|ref\|YP_002809153.1\| lysine-sensitive aspartokinase III [Vibrio cholerae M66-2], gi\|2270... gi\|15640418, gi\|... - gi\|9654811\|gb\|AAF93564.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae O1 biovar El Tor str.... gi\|11279658 - pir\|\|F82328 aspartokinase III, lysine-sensitive VC0391 [imported] - Vibrio cholerae (strain N16961 s... gi\|121587601, gi... - gi\|121587601\|ref\|ZP_01677366.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae 2740-80], gi\|12... gi\|254850623, gi... - gi\|254850623\|ref\|ZP_05239973.1\| aspartokinase III [Vibrio cholerae MO10], gi\|254846328\|gb\|EET24742.1... gi\|153223248, gi... - gi\|153223248\|ref\|ZP_01953745.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae MAK 757], gi\|12... gi\|121630363, gi... - gi\|121727244\|ref\|ZP_01680403.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae V52], gi\|121630... gi\|153822265, gi... - gi\|153822265\|ref\|ZP_01974932.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae B33], gi\|126520... gi\|153818238, gi... - gi\|153818238\|ref\|ZP_01970905.1\| aspartokinase III, lysine-sensitive [Vibrio cholerae NCTC 8457], gi\|...	361.0	[0..5]	[449..34]
gi\|75816807 - gi\|75816807\|ref\|ZP_00747267.1\| COG0527: Aspartokinases [Vibrio cholerae V52] gi\|229344491, gi... - gi\|229519802\|ref\|ZP_04409245.1\| aspartokinase [Vibrio cholerae RC9], gi\|229344491\|gb\|EEO09466.1\| asp... gi\|229508814, gi... - gi\|229508814\|ref\|ZP_04398306.1\| aspartokinase [Vibrio cholerae B33], gi\|229354217\|gb\|EEO19148.1\| asp... gi\|229355776, gi... - gi\|229507031\|ref\|ZP_04396537.1\| aspartokinase [Vibrio cholerae BX 330286], gi\|229355776\|gb\|EEO20696.... gi\|229220822 - gi\|229220822\|ref\|NP_230045.2\| aspartate kinase III [Vibrio cholerae O1 biovar eltor str. N16961] gi\|229368982, gi... - gi\|229606327\|ref\|YP_002876975.1\| aspartokinase [Vibrio cholerae MJ-1236], gi\|229368982\|gb\|ACQ59405.1... gi\|75828369, gi\|... - gi\|75828369\|ref\|ZP_00757804.1\| COG0527: Aspartokinases [Vibrio cholerae O395], gi\|229259768\|ref\|YP_0... gi\|75829068, gi\|... - gi\|75829068\|ref\|ZP_00758387.1\| COG0527: Aspartokinases [Vibrio cholerae MO10], gi\|116188058\|ref\|ZP_0...	359.0	[0..1]	[449..1]
gi\|116217624, gi... - gi\|75823974\|ref\|ZP_00753445.1\| COG0527: Aspartokinases [Vibrio cholerae RC385], gi\|116217624\|ref\|ZP_...	358.0	[0..1]	[449..1]
gi\|37681143, gi\|... - gi\|37681143\|ref\|NP_935752.1\| aspartate kinase III [Vibrio vulnificus YJ016], gi\|37199894\|dbj\|BAC9572...	358.0	[0..2]	[449..44]
gi\|116220376, gi... - gi\|75819731\|ref\|ZP_00749798.1\| COG0527: Aspartokinases [Vibrio cholerae V51], gi\|116220376\|ref\|ZP_01...	357.0	[0..1]	[449..1]
gi\|113951121, gi... - gi\|160876944\|ref\|YP_001556260.1\| aspartate kinase III [Shewanella baltica OS195], gi\|160862466\|gb\|AB...	356.0	[0..1]	[451..1]
gi\|125996238, gi... - gi\|68543845\|ref\|ZP_00583533.1\| Aspartate kinase:Aspartate kinase, monofunctional class [Shewanella b...	356.0	[0..1]	[451..1]

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Predicted Domain #1

Region A:
Residues: [1-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLVVAKFGG TSVADYGAMN RCAEIVLGNP DCRLVVVSAS SGVTNLLVEL TQESINDDGR  60
   61 LQRLKQIAQI QYAILDKLGR PNDVAAALDK LLSRMAVLSE ALVSARSKAT MDELLSLGEQ 120
  121 CSSALFAAVL REKGANSSAF DVRRVLRTDS HFGRAEPQVE QIALLSREHL LPLLSEQVIV 180
  181 TQGFIGADEA GQTTTLGRGG SDYSAALLAE ALTASAVEIW TDVAGIYTTD PRLAPNAHPI 240
  241 AEISFNEAAE MATFGAKVLH PATILPAVRQ QIQVFVGSSK EPEKGGTWIR HQVEDAPVFR 300
  301 AVALRRDQTL LNLHSLQMLH AQGFLAETFA TLARHKISVD LITTSEVNVS LTLDKTGSDS 360
  361 SGQGLLSEAL LQELSQHCRV RVEDGLALVA IIGNRIATTA GICRRVFEVL EPHNVRMICQ 420
  421 GASPHNLCVL VAESEAAQVV KALHENLFEG A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	91.045757
Match:	2j0wA
Description:	No description for 2j0wA was found.

Predicted functions:

Term	Confidence	Notes
acetolactate synthase activity	3.48670706716817	bayes_pls_golite062009
aspartate kinase activity	3.23731032633773	bayes_pls_golite062009
kinase activity	2.6815187488202	bayes_pls_golite062009
phosphotransferase activity, carboxyl group as acceptor	2.65970393362911	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.63366715780289	bayes_pls_golite062009
amino acid kinase activity	2.38310367076654	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	2.27460110663386	bayes_pls_golite062009
acetylglutamate kinase activity	1.28891782911186	bayes_pls_golite062009
catalytic activity	0.645256181736122	bayes_pls_golite062009
transferase activity	0.576589833246962	bayes_pls_golite062009
binding	0.532494654284107	bayes_pls_golite062009
glutamate 5-kinase activity	0.416864856459166	bayes_pls_golite062009
protein binding	0.066675161728882	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: