YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375424, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375424, gi|....

Description	E-value	Query Range	Subject Range
gi\|69255787, gi\|... - gi\|69255787\|ref\|ZP_00605529.1\| Sel1-like repeat [Magnetococcus sp. MC-1], gi\|68248152\|gb\|EAN30235.1\|...	216.0	[0..2]	[205..380]
gi\|84375186, gi\|... - gi\|84394204\|ref\|ZP_00992934.1\| hypothetical protein V12B01_19651 [Vibrio splendidus 12B01], gi\|84375...	203.0	[0..2]	[205..187]
gi\|53732839 - gi\|53732839\|ref\|ZP_00349593.1\| COG0790: FOG: TPR repeat, SEL1 subfamily [Haemophilus influenzae R284...	203.0	[0..3]	[205..49]
gi\|89346741, gi\|... - gi\|89902004\|ref\|YP_524475.1\| AAA ATPase [Rhodoferax ferrireducens T118], gi\|89346741\|gb\|ABD70944.1\| ...	201.0	[0..2]	[206..30]
gi\|90416741, gi\|... - gi\|90416741\|ref\|ZP_01224671.1\| hypothetical protein GB2207_03799 [marine gamma proteobacterium HTCC2... gi\|90416741\|ref\|... - hypothetical protein GB2207_03799 [marine gamma proteobacterium HTCC2207]	198.0	[0..2]	[205..35]
gi\|86139341, gi\|... - gi\|86139341\|ref\|ZP_01057910.1\| hypothetical protein MED193_12863 [Roseobacter sp. MED193], gi\|858238...	197.0	[0..1]	[201..513]
gi\|30248264, gi\|... - gi\|30248264\|ref\|NP_840334.1\| hypothetical protein NE0240 [Nitrosomonas europaea ATCC 19718], gi\|3018...	193.0	[0..6]	[206..707]
gi\|95930658, gi\|... - gi\|95930658\|ref\|ZP_01313392.1\| Sel1 [Desulfuromonas acetoxidans DSM 684], gi\|95133310\|gb\|EAT14975.1\|...	192.0	[0..2]	[205..192]
gi\|78166611, gi\|... - gi\|78186709\|ref\|YP_374752.1\| Sel1 repeat-containing protein [Pelodictyon luteolum DSM 273], gi\|78166...	188.0	[0..2]	[206..256]
gi\|88934766, gi\|... - gi\|88934766\|ref\|ZP_01140406.1\| Sel1-like repeat [Geobacter uraniumreducens Rf4], gi\|88918449\|gb\|EAR3...	186.0	[0..2]	[205..125]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRTALFALL PLVSSMCFAE TQAVDIYSQE QLLEMIRSEQ YLAKVKQDEC QLVQDIEARA  60
   61 EVLKQPLYQF LWGEMLNHGT CVKANAVKGM ALLREAAEQG SPEAMVKLAE YYQTGKFVIR 120
  121 NKDRAVNYLL PAAASGSLAA RMMLVRLYGE GYGSPRDYEM AYNWLYNNVF TDEATKKKAL 180
  181 SLLQVLAAKM PASAVARAQQ EHLRTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.221849
Match:	1ouvA
Description:	Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.879477893552599	bayes_pls_golite062009
protein binding	0.240895529492161	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: