YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24375391, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24375391, gi|....

Description	E-value	Query Range	Subject Range
gi\|78506156, gi\|... - gi\|78686020\|ref\|ZP_00850792.1\| Nucleoside diphosphate pyrophosphatase [Shewanella sp. ANA-3], gi\|785...	170.0	[0..1]	[200..1]
gi\|113971567, gi... - gi\|82498493\|ref\|ZP_00883987.1\| Nucleoside diphosphate pyrophosphatase [Shewanella sp. MR-4], gi\|8240...	170.0	[0..1]	[200..1]
gi\|113887703, gi... - gi\|78690790\|ref\|ZP_00855428.1\| Nucleoside diphosphate pyrophosphatase [Shewanella sp. MR-7], gi\|7850...	170.0	[0..1]	[200..1]
gi\|160873936, gi... - gi\|160873936\|ref\|YP_001553252.1\| NUDIX hydrolase [Shewanella baltica OS195], gi\|160859458\|gb\|ABX4799... gi\|149117779, gi... - gi\|217971997\|ref\|YP_002356748.1\| NUDIX hydrolase [Shewanella baltica OS223], gi\|217497132\|gb\|ACK4532... gi\|126175773, gi... - gi\|68542438\|ref\|ZP_00582168.1\| Conserved hypothetical protein 52 [Shewanella baltica OS155], gi\|6851...	167.0	[0..1]	[200..1]
gi\|78360880, gi\|... - gi\|78367107\|ref\|ZP_00837381.1\| Conserved hypothetical protein 52 [Shewanella sp. PV-4], gi\|78360880\|...	162.0	[0..4]	[199..3]
gi\|68547657, gi\|... - gi\|68547657\|ref\|ZP_00587189.1\| Conserved hypothetical protein 52 [Shewanella amazonensis SB2B], gi\|6...	161.0	[0..1]	[200..1]
gi\|54307664, gi\|... - gi\|54307664\|ref\|YP_128684.1\| putative MutT/nudix family protein [Photobacterium profundum SS9], gi\|4...	160.0	[0..6]	[199..14]
gi\|90411894, gi\|... - gi\|90411894\|ref\|ZP_01219902.1\| Putative MutT/nudix family protein [Photobacterium profundum 3TCK], g...	160.0	[0..6]	[199..14]
gi\|229344125, gi... - gi\|229519436\|ref\|ZP_04408879.1\| ADP-ribose pyrophosphatase [Vibrio cholerae RC9], gi\|229344125\|gb\|EE... gi\|229524420, gi... - gi\|229524420\|ref\|ZP_04413825.1\| ADP-ribose pyrophosphatase [Vibrio cholerae bv. albensis VL426], gi\|... gi\|229607011, gi... - gi\|229607011\|ref\|YP_002877659.1\| ADP-ribose pyrophosphatase [Vibrio cholerae MJ-1236], gi\|229369666\|... gi\|254845264, gi... - gi\|254849559\|ref\|ZP_05238909.1\| MutT/nudix family protein [Vibrio cholerae MO10], gi\|254845264\|gb\|EE... gi\|153214082, gi... - gi\|153214082\|ref\|ZP_01949216.1\| MutT/nudix family protein [Vibrio cholerae 1587], gi\|124115508\|gb\|EA... gi\|147673843, gi... - gi\|75827700\|ref\|ZP_00757135.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ... gi\|153827234, gi... - gi\|153827234\|ref\|ZP_01979901.1\| MutT/nudix family protein [Vibrio cholerae MZO-2], gi\|149738848\|gb\|E... gi\|9657011, gi\|1... - gi\|9657011\|gb\|AAF95578.1\| MutT/nudix family protein [Vibrio cholerae O1 biovar El Tor str. N16961], ... gi\|11355716 - pir\|\|A82077 MutT/nudix family protein VC2435 [imported] - Vibrio cholerae (strain N16961 serogroup O... gi\|227082556, gi... - gi\|227082556\|ref\|YP_002811107.1\| MutT/nudix family protein [Vibrio cholerae M66-2], gi\|227010444\|gb\|... gi\|229507505, gi... - gi\|229507505\|ref\|ZP_04397010.1\| ADP-ribose pyrophosphatase [Vibrio cholerae BX 330286], gi\|229355010... gi\|229352264, gi... - gi\|229512299\|ref\|ZP_04401778.1\| ADP-ribose pyrophosphatase [Vibrio cholerae B33], gi\|229352264\|gb\|EE...	159.0	[0..3]	[199..8]
tr\|Q87VG4\|Q87VG4... - MutT/nudix family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4973 PE=3 SV=1 gi\|28872087, gi\|... - gi\|28872087\|ref\|NP_794706.1\| mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000]... gi\|213967896, gi... - gi\|213967896\|ref\|ZP_03396042.1\| mutT/nudix family protein [Pseudomonas syringae pv. tomato T1], gi\|2...	159.0	[0..6]	[199..7]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPQVFSQTD IEILEKKSLY QGFFALEQFT FKHKLFAGGW SQPVTREVFE RGHAVVVLPY  60
   61 DLKRDKIVLI EQVRFPALAT TKSPWLMELV AGMIAPDEMP LDVAHRELLE ETGLTASNIH 120
  121 FVNSYLASPG GSTERFYFYW AEVDSSQAQG LHGLADEHED IRLHVVDREA AYNGVVTGEI 180
  181 DNASTVIGLQ WLQLNYQQLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1g0sA
Description:	ADP-ribose pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.0879699007552	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.859040726089354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.859001295204634	bayes_pls_golite062009
pyrophosphatase activity	0.231401568856773	bayes_pls_golite062009
binding	0.165092558977235	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: