YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSJ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	607 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSJ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|75814597 - gi\|75814597\|ref\|ZP_00745166.1\| COG0369: Sulfite reductase, alpha subunit (flavoprotein) [Vibrio chol...	459.0	[0..4]	[607..9]
gi\|116187953, gi... - gi\|75828921\|ref\|ZP_00758249.1\| COG0369: Sulfite reductase, alpha subunit (flavoprotein) [Vibrio chol...	459.0	[0..4]	[607..9]
gi\|229516006, gi... - gi\|229516006\|ref\|ZP_04405457.1\| sulfite reductase [NADPH] flavoprotein alpha-component [Vibrio chole... gi\|229354363, gi... - gi\|229508595\|ref\|ZP_04398091.1\| sulfite reductase [NADPH] flavoprotein alpha-component [Vibrio chole... gi\|148874061, gi... - gi\|153830459\|ref\|ZP_01983126.1\| sulfite reductase (NADPH) flavoprotein alpha-component [Vibrio chole... gi\|229504967, gi... - gi\|229504967\|ref\|ZP_04394478.1\| sulfite reductase [NADPH] flavoprotein alpha-component [Vibrio chole... gi\|227008484, gi... - gi\|227080596\|ref\|YP_002809147.1\| sulfite reductase (NADPH) flavoprotein alpha-component [Vibrio chol... CYSJ_VIBCH - Sulfite reductase [NADPH] flavoprotein alpha-component OS=Vibrio cholerae serotype O1 (strain ATCC 3... gi\|229368989, gi... - gi\|229606334\|ref\|YP_002876982.1\| sulfite reductase [NADPH] flavoprotein alpha-component [Vibrio chol... CYSJ_VIBCH - Sulfite reductase [NADPH] flavoprotein alpha-component OS=Vibrio cholerae GN=cysJ PE=3 SV=1 gi\|229526971, gi... - gi\|229526971\|ref\|ZP_04416368.1\| sulfite reductase [NADPH] flavoprotein alpha-component [Vibrio chole... gi\|124117583, gi... - gi\|153224534\|ref\|ZP_01954492.1\| sulfite reductase (NADPH) flavoprotein alpha-component [Vibrio chole... gi\|121547180, gi... - gi\|121590954\|ref\|ZP_01678274.1\| sulfite reductase (NADPH) flavoprotein alpha-component [Vibrio chole... gi\|153820085, gi... - gi\|153820085\|ref\|ZP_01972752.1\| sulfite reductase (NADPH) flavoprotein alpha-component [Vibrio chole... gi\|125617300, gi... - gi\|254851695\|ref\|ZP_05241045.1\| sulfite reductase flavoprotein alpha-component [Vibrio cholerae MO10...	459.0	[0..4]	[607..16]
gi\|75828364 - gi\|75828364\|ref\|ZP_00757799.1\| COG0369: Sulfite reductase, alpha subunit (flavoprotein) [Vibrio chol...	458.0	[0..4]	[607..9]
gi\|25284892 - pir\|\|A83726 sulfite reductase (NADPH) BH0609 [imported] - Bacillus halodurans (strain C-125) gi\|10173223, gi\|... - gi\|15613172\|ref\|NP_241475.1\| sulfite reductase (NADPH) [Bacillus halodurans C-125], gi\|10173223\|dbj\|...	454.0	[0..5]	[607..2]
gi\|69950755, gi\|... - gi\|69950755\|ref\|ZP_00638573.1\| Sulphite reductase [NADPH] flavoprotein, alpha chain [Shewanella frig...	453.0	[0..1]	[607..1]
gi\|77813999, gi\|... - gi\|77813999\|ref\|ZP_00813268.1\| Sulphite reductase (NADPH) flavoprotein, alpha chain [Shewanella putr...	453.0	[0..1]	[607..1]
gi\|120557804, gi... - gi\|82741969\|ref\|ZP_00904677.1\| Sulphite reductase (NADPH) flavoprotein, alpha chain [Shewanella sp. ...	453.0	[0..1]	[607..1]
gi\|68541687, gi\|... - gi\|68541687\|ref\|ZP_00581428.1\| Sulphite reductase [NADPH] flavoprotein, alpha chain [Shewanella balt...	451.0	[0..1]	[607..1]
gi\|90437447, gi\|... - gi\|90581337\|ref\|ZP_01237133.1\| putative sulfite reductase (NADPH) flavoprotein alpha-component [Vibr...	450.0	[0..1]	[607..1]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKELSSLA SPLSQSQVDK LKQLTAELNS VQLAWVSGYL AATANTSGSA IQVAASVTEA  60
   61 QAAQTVTILY GSQTGNGRGI AKALAEKAKT QGYSVNLASM GEYNVRQLKQ ETLLLLVVST 120
  121 HGEGEAPDDA IELHKFLATK RAPQLNNLHY SVLALGDSSY EFFCQTGKDF DARLSALGAK 180
  181 ALLPLVECDV DYEAAAGQWH ADVLTAVKPL IQTTANVVAL NEI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.221849
Match:	1ykgA
Description:	Solution structure of the flavodoxin-like domain from the Escherichia coli sulfite reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	1.2698167260481	bayes_pls_golite062009
binding	0.679191616354295	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
protein binding	0.214152148319388	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.19932996243162	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [224-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSTSAQVASE SEFTKQNPYR AEVLVSQKIT GRDSDRDVRH VEIDLGESGL HYEVGDALGV  60
   61 WFSNSEILVG EILAGLGLAA DAKVTVGSES ISLKQALIDK KELTQLYPGL VKAWAELSAS 120
  121 SELLALSEDK EQLRQFILNH QFVDLVTNYK LPAEANLDAN KLLELLRPLT PRLYSIASSQ 180
  181 TEVDTEVHLT VALVEDEHQG QTRFGGASHF LASAQEGAEV KVYVEPNKHF RLPENPDTPV 240
  241 IMIGPGTGVA PFRAFMQERV AQGAKGDSWL FFGNPHFEQD FLYQTEWQQY LKNGDLTRID 300
  301 VAFSRDQAHK IYVQHRIKEQ GQALWQWLQN GAHLYICGDA ERMAKDVHQA LLAVAVEFGG 360
  361 LSSEAAEEYF ETLRSHKRYQ KDVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.154902
Match:	1ddgA
Description:	Sulfite reductase flavoprotein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfite reductase (NADPH) activity	5.76553542954967	bayes_pls_golite062009
riboflavin synthase activity	3.35298576823071	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.39078910955847	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.08105746396932	bayes_pls_golite062009
catalytic activity	2.05427820269334	bayes_pls_golite062009
oxidoreductase activity	1.41563626779426	bayes_pls_golite062009
binding	0.817902645839011	bayes_pls_golite062009
protein binding	0.317902199012291	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.0214187866366899	bayes_pls_golite062009
transferase activity	0.00498326987177106	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: