YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349751, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	896 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349751, gi|....

Description	E-value	Query Range	Subject Range
gi\|82404065, gi\|... - gi\|82497957\|ref\|ZP_00883478.1\| Beta-N-acetylhexosaminidase [Shewanella sp. MR-4], gi\|82404065\|gb\|EAP...	920.0	[0..1]	[896..1]
gi\|37679126, gi\|... - gi\|37679126\|ref\|NP_933735.1\| N-acetyl-beta-hexosaminidase [Vibrio vulnificus YJ016], gi\|37197868\|dbj...	916.0	[0..12]	[895..17]
gi\|78508897, gi\|... - gi\|78691692\|ref\|ZP_00856293.1\| Beta-N-acetylhexosaminidase [Shewanella sp. MR-7], gi\|78508897\|gb\|EAP...	912.0	[0..1]	[896..1]
gi\|28805741 - gi\|28805741\|dbj\|BAC59018.1\| N,N'-diacetylchitobiase precursor [Vibrio parahaemolyticus RIMD 2210633] gi\|28805741, gi\|... - gi\|28897529\|ref\|NP_797134.1\| N,N'-diacetylchitobiase precursor [Vibrio parahaemolyticus RIMD 2210633...	912.0	[0..19]	[895..1]
gi\|116184636, gi... - gi\|75855294\|ref\|ZP_00762949.1\| COG3525: N-acetyl-beta-hexosaminidase [Vibrio sp. Ex25], gi\|254230153...	910.0	[0..19]	[895..1]
CHB_VIBHA - N,N'-diacetylchitobiase OS=Vibrio harveyi GN=chb PE=1 SV=1	908.0	[0..19]	[895..1]
gi\|27359839, gi\|... - gi\|27363723\|ref\|NP_759251.1\| N-acetyl-beta-hexosaminidase [Vibrio vulnificus CMCP6], gi\|27359839\|gb\|...	906.0	[0..19]	[895..1]
gi\|229369865, gi... - gi\|229607210\|ref\|YP_002877858.1\| beta-hexosaminidase [Vibrio cholerae MJ-1236], gi\|229369865\|gb\|ACQ6... gi\|229519234, gi... - gi\|229519234\|ref\|ZP_04408677.1\| beta-hexosaminidase [Vibrio cholerae RC9], gi\|229343923\|gb\|EEO08898.... gi\|229507706, gi... - gi\|229507706\|ref\|ZP_04397211.1\| beta-hexosaminidase [Vibrio cholerae BX 330286], gi\|229355211\|gb\|EEO... gi\|227082341, gi... - gi\|227082341\|ref\|YP_002810892.1\| beta-N-acetylhexosaminidase [Vibrio cholerae M66-2], gi\|227010229\|g... gi\|254849347, gi... - gi\|75831279\|ref\|ZP_00760544.1\| COG3525: N-acetyl-beta-hexosaminidase [Vibrio cholerae MO10], gi\|2548... gi\|121549527, gi... - gi\|121586261\|ref\|ZP_01676051.1\| beta-N-acetylhexosaminidase [Vibrio cholerae 2740-80], gi\|121549527\|... gi\|153221265, gi... - gi\|153221265\|ref\|ZP_01952280.1\| beta-N-acetylhexosaminidase [Vibrio cholerae MAK 757], gi\|124119794\|... gi\|9656775, gi\|1... - gi\|9656775\|gb\|AAF95361.1\| beta-N-acetylhexosaminidase [Vibrio cholerae O1 biovar El Tor str. N16961]... gi\|147673355, gi... - gi\|75827511\|ref\|ZP_00756946.1\| COG3525: N-acetyl-beta-hexosaminidase [Vibrio cholerae O395], gi\|2271... gi\|153817124, gi... - gi\|153817124\|ref\|ZP_01969791.1\| beta-N-acetylhexosaminidase [Vibrio cholerae NCTC 8457], gi\|12651239... gi\|11354437 - pir\|\|E82102 beta-N-acetylhexosaminidase VC2217 [imported] - Vibrio cholerae (strain N16961 serogroup... gi\|75817004, gi\|... - gi\|75817004\|ref\|ZP_00747460.1\| COG3525: N-acetyl-beta-hexosaminidase [Vibrio cholerae V52], gi\|12172... gi\|229352064, gi... - gi\|229512099\|ref\|ZP_04401578.1\| beta-hexosaminidase [Vibrio cholerae B33], gi\|229352064\|gb\|EEO17005....	902.0	[0..19]	[895..1]
gi\|194535863, gi... - gi\|75824334\|ref\|ZP_00753791.1\| COG3525: N-acetyl-beta-hexosaminidase [Vibrio cholerae RC385], gi\|254... tr\|D7HE06\|D7HE06... - Beta-N-acetylhexosaminidase OS=Vibrio cholerae RC385 GN=VCRC385_01491 PE=4 SV=1	900.0	[0..19]	[895..1]
gi\|78505642, gi\|... - gi\|78686628\|ref\|ZP_00851393.1\| Beta-N-acetylhexosaminidase [Shewanella sp. ANA-3], gi\|78505642\|gb\|EA...	900.0	[0..1]	[896..1]

Back

Predicted Domain #1

Region A:
Residues: [1-896]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTIAATAI LFALGLSACS QGPKTVNTPA PSSAEQPTPA LLTQAQLQQF GDNLGVTYRV  60
   61 LTNRPDDNCD KAAAEGRCFV AEIDFVPEVD LIGKEWAIYF SQMRPVQSVE GKEFSITHIK 120
  121 GDLYRIAPTE AFSGFSKGVK KTLRFRGELW QLSETDAMPN YYIVAGDLSP VVIASTQVKQ 180
  181 DPETRMEVRP YVEPFTDMVK QYSRTDADKL APATASQLFS NNQNVSEDAS LAVNTIIPTP 240
  241 KTVVLHSNDK VVSLSSGIKL DVASVSSPSA EKQSFKTDQV AAALERLARL GVKESEQGLV 300
  301 MKLSWRQGAE GSYLLDIKPD GIKIAAGDAA GFSYALSSLT SLIDVQDLRV NAMTIEDSPR 360
  361 YPFRGMHIDV ARNFHSKAMI FALIDQMAAY KLNKLHLHMA DDEGWRLEID GLPELTDIGS 420
  421 KRCHDLEENT CLLPQLGSGP FAESSVNGFY SKQDYIDILK YANARQIQVI PSMDMPGHSR 480
  481 AAIKSMEARY RKLLAQGKPT EAKTYLLSDA ADTTVYSSVQ YYNDNTLNVC MESTYQFVDK 540
  541 VIDEIAKLHQ AAGQPLTRYH IGADETAGAW KQSPECLSFV ANNDKGVKSI EDLGAYFIER 600
  601 ISNQLAEKGI EAAGWSDGMS HVRPSYMPAK VQSNIWDVIA YKGYEHANQQ VNNGWDVVLS 660
  661 NPEVLYFDFP YEADPKEHGY YWASRATNAH KVFSFMPDNL VANAEQWTDL QNLPFEADDR 720
  721 ARTDEKGKKS GPREQGKNFA GLQGQLWSET IRSNDTVEYM IFPRLLMLAE RAWHQAEWEV 780
  781 PYQYQGALYN QSTGHFTAAM RDAQAQSWQQ MANTLGHKEF IKLDKAGIDY RVPTVGAKIQ 840
  841 GGKLFANVAY PGLKMEFRQA NGQWQAYQAG QAVTAPVEIR AIAADGIRKG RSLIVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1qbaA
Description:	BACTERIAL CHITOBIASE, GLYCOSYL HYDROLASE FAMILY 20
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
beta-N-acetylhexosaminidase activity	7.18312657765525	bayes_pls_golite062009
hexosaminidase activity	4.78304165611462	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	4.11319792356479	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.92012282533754	bayes_pls_golite062009
hydrolase activity	3.00246423046472	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
chitinase activity	0.8156800179481	bayes_pls_golite062009
amylase activity	0.748967897302847	bayes_pls_golite062009
pattern binding	0.530930429677881	bayes_pls_golite062009
glucosidase activity	0.528679164808812	bayes_pls_golite062009
carbohydrate binding	0.4998423581103	bayes_pls_golite062009
receptor binding	0.367373698683903	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: