YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374870, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374870, gi|....

Description	E-value	Query Range	Subject Range
gi\|113969531, gi... - gi\|82497575\|ref\|ZP_00883107.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	305.0	[0..1]	[385..1]
gi\|113888206, gi... - gi\|114046764\|ref\|YP_737314.1\| putative oxygen-independent coproporphyrinogen III oxidase [Shewanella...	304.0	[0..1]	[385..1]
gi\|117611969, gi... - gi\|78688431\|ref\|ZP_00853120.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	303.0	[0..1]	[385..1]
gi\|82741387, gi\|... - gi\|82741387\|ref\|ZP_00904109.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	295.0	[0..2]	[385..4]
gi\|69164060, gi\|... - gi\|69952722\|ref\|ZP_00640106.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	294.0	[0..9]	[384..3]
gi\|77814847, gi\|... - gi\|77814847\|ref\|ZP_00814099.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	293.0	[0..7]	[385..9]
gi\|37525144, gi\|... - gi\|37525144\|ref\|NP_928488.1\| coproporphyrinogen III oxidase [Photorhabdus luminescens subsp. laumond...	292.0	[0..9]	[384..2]
gi\|126637359, gi... - gi\|78368544\|ref\|ZP_00838767.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Shewanell...	291.0	[0..9]	[385..2]
gi\|148550176, gi... - gi\|82736101\|ref\|ZP_00898961.1\| Putative oxygen-independent coproporphyrinogen III oxidase [Pseudomon...	288.0	[0..11]	[384..16]
gi\|110344696, gi... - gi\|110643104\|ref\|YP_670834.1\| coproporphyrinogen III oxidase [Escherichia coli 536], gi\|110344696\|gb... gi\|75241249, gi\|... - gi\|75241249\|ref\|ZP_00725111.1\| COG0635: Coproporphyrinogen III oxidase and related Fe-S oxidoreducta...	288.0	[0..9]	[384..2]

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Predicted Domain #1

Region A:
Residues: [1-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNVSPQLT LPPLSLYIHI PWCVQKCPYC DFNSHGQNGE LPQQAYVDAL LADLRQDLHL  60
   61 VQGRKLHTIF IGGGTPSLFD ANQIKRILDD ANALIPFSDG IEITMEANPG TLEHDDFSAY 120
  121 RAAGVTRLSI GVQSFSKDKL NLLGRIHDQN EAQTAAQKAR QADYLSFNLD LMHGLPNQSF 180
  181 EEAMADIDTA ASLNPPHLSW YQLTIEPNTL FHSKPPQLPD DEDLWQIYEQ GQQKLAALGY 240
  241 EQYEISAYAK PGYQCQHNLN YWQFGDYLGI GCGAHGKVTL PEENRIIRTV KIKHPKGYLT 300
  301 ADNYTFEQTE VAQEDRALEY LMNRLRLMTP IPKQEFEDRT GLPRDVLKDG MEKAKQRGLL 360
  361 TESAEHWQLT NKGHMFVNDL LTQFC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.30103
Match:	1oltA
Description:	Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
coproporphyrinogen oxidase activity	2.41520078366277	bayes_pls_golite062009
biotin synthase activity	2.08611410724267	bayes_pls_golite062009
radical SAM enzyme activity	1.93582371651697	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	1.85924424492023	bayes_pls_golite062009
catalytic activity	1.48331922124015	bayes_pls_golite062009
sulfurtransferase activity	0.947420499060224	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.107588242235537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: