YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349560, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349560, gi|....

Description	E-value	Query Range	Subject Range
gi\|28204459, gi\|... - gi\|28212016\|ref\|NP_782960.1\| pyrroline-5-carboxylate reductase [Clostridium tetani E88], gi\|28204459...	191.0	[0..2]	[271..1]
gi\|67849921, gi\|... - gi\|67916119\|ref\|ZP_00509840.1\| Delta 1-pyrroline-5-carboxylate reductase [Clostridium thermocellum A... gi\|196251994, gi... - gi\|196251994\|ref\|ZP_03150658.1\| pyrroline-5-carboxylate reductase [Clostridium thermocellum DSM 4150...	188.0	[0..2]	[272..1]
gi\|95926228, gi\|... - gi\|95926228\|ref\|ZP_01309037.1\| hypothetical protein CburR_01001956 [Coxiella burnetii RSA 331], gi\|1... gi\|212011944, gi... - gi\|212213534\|ref\|YP_002304470.1\| pyrroline-5-carboxylate reductase [Coxiella burnetii CbuG_Q212], gi... gi\|29655368, gi\|... - gi\|29655368\|ref\|NP_821060.1\| pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 493], gi\|29542...	187.0	[0..1]	[271..1]
gi\|42782087, gi\|... - gi\|42782087\|ref\|NP_979334.1\| pyrroline-5-carboxylate reductase [Bacillus cereus ATCC 10987], gi\|4273...	186.0	[0..2]	[271..1]
gi\|94492651, gi\|... - gi\|94492651\|ref\|ZP_01299858.1\| hypothetical protein CburD_01000233 [Coxiella burnetii Dugway 7E9-12]... gi\|120575304, gi... - gi\|153209619\|ref\|ZP_01947457.1\| pyrroline-5-carboxylate reductase [Coxiella burnetii 'MSU Goat Q177'... gi\|165916367, gi... - gi\|165924191\|ref\|ZP_02220023.1\| pyrroline-5-carboxylate reductase [Coxiella burnetii RSA 334], gi\|16... gi\|212013850, gi... - gi\|212219588\|ref\|YP_002306375.1\| pyrroline-5-carboxylate reductase [Coxiella burnetii CbuK_Q154], gi...	186.0	[0..1]	[271..1]
gi\|218541204, gi... - gi\|218898056\|ref\|YP_002446467.1\| pyrroline-5-carboxylate reductase [Bacillus cereus G9842], gi\|21854... gi\|228858122, gi... - gi\|228901519\|ref\|ZP_04065702.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 4222],... gi\|228908746, gi... - gi\|228908746\|ref\|ZP_04072580.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 200], ... gi\|75764862, gi\|... - gi\|75764862\|ref\|ZP_00744228.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar isr...	186.0	[0..2]	[271..1]
gi\|49480085, gi\|... - gi\|49480085\|ref\|YP_037223.1\| pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar konku...	186.0	[0..2]	[269..1]
gi\|163862929, gi... - gi\|89208025\|ref\|ZP_01186549.1\| Delta 1-pyrroline-5-carboxylate reductase [Bacillus weihenstephanensi...	185.0	[0..2]	[271..1]
gi\|167532035, gi... - gi\|167631737\|ref\|ZP_02390064.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0442], g... gi\|167514661, gi... - gi\|167637154\|ref\|ZP_02395434.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0193], g... gi\|170671266, gi... - gi\|170685006\|ref\|ZP_02876231.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0465], g... gi\|170705216, gi... - gi\|170705216\|ref\|ZP_02895681.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0389], g... gi\|177649865, gi... - gi\|177649865\|ref\|ZP_02932866.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0174], g... gi\|49185927, gi\|... - gi\|49185927\|ref\|YP_029179.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Sterne], gi\|... gi\|47503581, gi\|... - gi\|47528433\|ref\|YP_019782.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. 'Ames Ancest... gi\|30263087, gi\|... - gi\|30263087\|ref\|NP_845464.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Ames], gi\|30... gi\|254760978 - gi\|254760978\|ref\|ZP_05213002.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Australia... gi\|254752460 - gi\|254752460\|ref\|ZP_05204496.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Vollum] gi\|21401019, gi\|... - gi\|65320395\|ref\|ZP_00393354.1\| COG0345: Pyrroline-5-carboxylate reductase [Bacillus anthracis str. A... gi\|254742684 - gi\|254742684\|ref\|ZP_05200369.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Kruger B] gi\|254738146 - gi\|254738146\|ref\|ZP_05195849.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Western N... gi\|254685679 - gi\|254685679\|ref\|ZP_05149538.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. CNEVA-906... gi\|229600273, gi... - gi\|229600273\|ref\|YP_002867357.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0248], ...	184.0	[0..2]	[270..1]

Back

Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQKICFIG AGNMTRSIIS GLIRSGYPAS QVQATNPSQG KLDALATDFG VRVSQDNVSA  60
   61 AQDADVIILS VKPQLMEQVC QALQGIDMSN KLLITIAAGI KASRYSEYLA QPITLIRTMP 120
  121 NTPMQIGVGM TGLYAPQSLS DAQKAIAERL MSSGGEIVWV NEESDINQVI ALAGSSPAYF 180
  181 FLLMESMIDA GKQMGMDEAK ARSLVQQAAL GAAMMAKQNP ELTLGNLREN VTSKGGTTAQ 240
  241 AIATFEAADL RGVVKKAMEN CINRAEEMAK TF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1yqgA
Description:	Crystal structure of a pyrroline-5-carboxylate reductase from neisseria meningitides mc58
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.09625241707629	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	2.72731575180636	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	1.68807048598905	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.65338499044318	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47309297191111	bayes_pls_golite062009
DNA binding	1.02274180655721	bayes_pls_golite062009
transcription regulator activity	0.955628854752953	bayes_pls_golite062009
pyrroline-5-carboxylate reductase activity	0.910660658157254	bayes_pls_golite062009
nucleic acid binding	0.901776352952123	bayes_pls_golite062009
phosphogluconate dehydrogenase (decarboxylating) activity	0.894434286717571	bayes_pls_golite062009
binding	0.553666136934364	bayes_pls_golite062009
transcription factor activity	0.368443846770004	bayes_pls_golite062009
structural molecule activity	0.345975336806588	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	0.26638821705482	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: