YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374825, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374825, gi|....

Description	E-value	Query Range	Subject Range
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	216.0	[0..12]	[262..1062]
gi\|76659287 - gi\|76659287\|ref\|XP_885188.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 13 ...	210.0	[0..1]	[262..56]
gi\|18250916, gi\|... - gi\|6911265\|gb\|AAF31458.1\| HRNT1 [Homo sapiens], gi\|2266994\|gb\|AAB63466.1\| O-linked GlcNAc transferas...	208.0	[0..1]	[262..55]
gi\|72002781, gi\|... - gi\|72382931\|ref\|YP_292286.1\| TPR repeat-containing protein [Prochlorococcus marinus str. NATL2A], gi...	207.0	[0..8]	[261..123]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	204.0	[0..1]	[262..318]
gi\|5052534 - gi\|5052534\|gb\|AAD38597.1\|AF145622_1 BcDNA.GH04245 [Drosophila melanogaster]	203.0	[0..1]	[262..210]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	202.0	[0..1]	[262..171]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	201.0	[0..1]	[262..181]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHGLSGFSL AIALSLTVTG CVTERTYTGT DIPVSERKLD RVAAARERMQ LGLTYLNRGN  60
   61 SEQAKYNLDK AIEYAPELED VHVAMAYYYQ TVGDLVRTER AYQDAINTKD ASGDSMNNFG 120
  121 VFLCQQKQYD KAEKMFLAAI EMPKYTRTAS SYENLGLCSR DAGRAEKARQ YFQMALKYDP 180
  181 RRSVSLLELV ELGMNKGDYI DARNQLARYH QVAAQTPESL TLGIKIEQAL NDDAAMKRFG 240
  241 ILLLAKFPAS SQAKQYRVNL HQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.221849
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.23224150119114	bayes_pls_golite062009
protein binding	1.11681353322487	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: