YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349491, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	549 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349491, gi|....

Description	E-value	Query Range	Subject Range
gi\|7798554 - gi\|7798554\|dbj\|BAA95629.1\| phenylalanine ammonia lyase [Catharanthus roseus]	709.0	[0..8]	[548..46]
gi\|71277049 - gi\|71277049\|gb\|AAZ29735.1\| phenylalanine ammonia lyase [Trifolium pratense]	707.0	[0..8]	[548..57]
PALY_POPTR - Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1 gi\|169454, gi\|541843 - gi\|541843\|pir\|\|JQ2265 phenylalanine ammonia-lyase (EC 4.3.1.5) - western balsam poplar x cottonwood,...	707.0	[0..8]	[548..45]
PALY_CITLI - Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1	706.0	[0..8]	[548..51]
gi\|18001007 - gi\|18001007\|gb\|AAL55242.1\|AF299330_1 phenylalanine ammonia-lyase [Lactuca sativa]	705.0	[0..8]	[548..40]
gi\|14486430 - gi\|14486430\|gb\|AAK62030.1\| phenylalanine ammonia-lyase 1 [Manihot esculenta]	703.0	[0..8]	[548..41]
PAL1_PRUAV - Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1	703.0	[0..8]	[548..48]
PAL1_TOBAC - Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1	702.0	[0..8]	[548..43]

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Predicted Domain #1

Region A:
Residues: [1-549]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKTIPLVI AAILPMTSIA ATHTLDGTSL TVDKLWEISK SGEDVNISKE GWERIRASYK  60
   61 APIDAAEDGR SIYGLTVNYG ALKDQRVAGA SVENEPNRSE SIKFNERQMR IQAAGMEPFL 120
  121 PEAESKMAMV IRLNQMAAGF TGMSVDAANA YMEYINNDVY PLIPSRGSEG ANDLSMVTHV 180
  181 GLALMGEWDV MYQGKRRSSA EVRKELGLKK YQPFGMDGIS ILSNSNVAEA QSITAVKKVE 240
  241 HLLDLSSVII ASSLEALNGN VSPFLWHTVD TKGWPQGHEA AESILSHLKG SYLWSLDSKR 300
  301 NLQDPLSFRS SGQILAAAKE ELRQAKELLN TAINHTTDNP IVHTNARDDL WYSNSDYVDG 360
  361 LRVGGKNVFV NSGSNFDNTQ LAVQLESLSR ALAQVIHISA WRTTQLDDGH RTKLTTYLIS 420
  421 KENVGGDGFA NIAQSMSGLY AEAMSLTNSA AIYGVPTSVG IEETFSNVNL IANRLDKIAD 480
  481 IAYEIYSYEV LHTTQGMDIR TKEYSQKMGN GTSEFLHEYR KYVPFVSKDR IYTPDINNGV 540
  541 KFLKTYSTR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1w27A
Description:	Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
histidine ammonia-lyase activity	3.53226750625841	bayes_pls_golite062009
catalytic activity	2.51282259572665	bayes_pls_golite062009
lyase activity	2.31268471569846	bayes_pls_golite062009
carbon-nitrogen lyase activity	2.2046475419807	bayes_pls_golite062009
amidine-lyase activity	0.901614580251298	bayes_pls_golite062009
argininosuccinate lyase activity	0.617974375213548	bayes_pls_golite062009
ammonia-lyase activity	0.491229595527877	bayes_pls_golite062009
fumarate hydratase activity	0.364320954362762	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: