YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349393, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349393, gi|....

Description	E-value	Query Range	Subject Range
gi\|113888304, gi... - gi\|78690257\|ref\|ZP_00854906.1\| Flagellar motor switch protein FliM [Shewanella sp. MR-7], gi\|7851028... gi\|113969632, gi... - gi\|82495246\|ref\|ZP_00880823.1\| Flagellar motor switch protein FliM [Shewanella sp. MR-4], gi\|8240674...	355.0	[0..1]	[343..1]
gi\|78505693, gi\|... - gi\|78686529\|ref\|ZP_00851295.1\| Flagellar motor switch protein FliM [Shewanella sp. ANA-3], gi\|785056...	354.0	[0..1]	[343..1]
gi\|167892138 - gi\|167892138\|ref\|ZP_02479540.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 7894] gi\|52208080, gi\|... - gi\|53717666\|ref\|YP_106652.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei K96243],... gi\|167900650 - gi\|167900650\|ref\|ZP_02487855.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei NCTC ... gi\|167822054 - gi\|167822054\|ref\|ZP_02453525.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 9] gi\|226193119, gi... - gi\|226193119\|ref\|ZP_03788729.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei Pakis... gi\|167843667 - gi\|167843667\|ref\|ZP_02469175.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei B7210... gi\|134247162, gi... - gi\|134281495\|ref\|ZP_01768203.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 305],... gi\|217424100, gi... - gi\|217424100\|ref\|ZP_03455600.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 576],... gi\|237814422, gi... - gi\|237814422\|ref\|YP_002898873.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei MSHR... gi\|167908870 - gi\|167908870\|ref\|ZP_02495961.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 112] gi\|167916909 - gi\|167916909\|ref\|ZP_02504000.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei BCC21... gi\|100122510, gi... - gi\|67760066\|ref\|ZP_00498792.1\| COG1868: Flagellar motor switch protein [Burkholderia pseudomallei S1... gi\|76581206, gi\|... - gi\|76811753\|ref\|YP_331656.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 1710b], ... gi\|167736438 - gi\|167736438\|ref\|ZP_02409212.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 14] gi\|167813512 - gi\|167813512\|ref\|ZP_02445192.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei 91] gi\|167717395 - gi\|167717395\|ref\|ZP_02400631.1\| flagellar motor switch protein FliM [Burkholderia pseudomallei DM98] gi\|82533988, gi\|... - gi\|90662067\|ref\|ZP_01249903.1\| hypothetical protein Bpse110_02006044 [Burkholderia pseudomallei 1106... gi\|254298640, gi... - gi\|83676805\|ref\|ZP_00938575.1\| COG1868: Flagellar motor switch protein [Burkholderia pseudomallei 40... gi\|126227081, gi... - gi\|82532520\|ref\|ZP_00891731.1\| COG1868: Flagellar motor switch protein [Burkholderia pseudomallei 11... gi\|126220885, gi... - gi\|67738770\|ref\|ZP_00489411.1\| COG1868: Flagellar motor switch protein [Burkholderia pseudomallei 66... gi\|194512702, gi... - gi\|67755106\|ref\|ZP_00494005.1\| COG1868: Flagellar motor switch protein [Burkholderia pseudomallei Pa... gi\|184214624, gi... - gi\|99913452\|ref\|ZP_01320101.1\| hypothetical protein Bpse1_03000620 [Burkholderia pseudomallei 1655],... gi\|67682203, gi\|... - gi\|90291123\|ref\|ZP_01210757.1\| hypothetical protein Bpse17_02004193 [Burkholderia pseudomallei 1710a...	349.0	[0..2]	[326..4]
gi\|83626173, gi\|... - gi\|83626173\|ref\|ZP_00936399.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei JHU], gi... gi\|67634270, gi\|... - gi\|67634270\|ref\|ZP_00433249.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei 10399], ... gi\|67641904, gi\|... - gi\|67641904\|ref\|ZP_00440669.1\| flagellar motor switch protein FliM [Burkholderia mallei GB8 horse 4]... gi\|126243936, gi... - gi\|67646099\|ref\|ZP_00444366.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei NCTC 102... gi\|52427325, gi\|... - gi\|53723902\|ref\|YP_104282.1\| flagellar motor switch protein FliM [Burkholderia mallei ATCC 23344], g... gi\|84520100, gi\|... - gi\|84520100\|ref\|ZP_01007238.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei SAVP1], ... gi\|85066173 - gi\|85066173\|ref\|ZP_01027026.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei 10229] gi\|87316677, gi\|... - gi\|87316677\|ref\|ZP_01097691.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei 20027212... gi\|167000456, gi... - gi\|243063644\|gb\|EES45830.1\| flagellar motor switch protein FliM [Burkholderia mallei PRL-20], gi\|167... gi\|194316643, gi... - gi\|254174753\|ref\|ZP_04881414.1\| flagellar motor switch protein FliM [Burkholderia mallei ATCC 10399]... gi\|124293608, gi... - gi\|124385588\|ref\|YP_001027842.1\| flagellar motor switch protein FliM [Burkholderia mallei NCTC 10229... gi\|83620189, gi\|... - gi\|83620189\|ref\|ZP_00930612.1\| COG1868: Flagellar motor switch protein [Burkholderia mallei FMH], gi...	349.0	[0..2]	[326..4]
gi\|91785619, gi\|... - gi\|91785619\|ref\|YP_560825.1\| flagellar motor switch protein FliM [Burkholderia xenovorans LB400], gi...	347.0	[0..2]	[326..4]
gi\|83654110, gi\|... - gi\|83720285\|ref\|YP_440587.1\| flagellar motor switch protein FliM [Burkholderia thailandensis E264], ... gi\|167617380 - gi\|167617380\|ref\|ZP_02386011.1\| flagellar motor switch protein FliM [Burkholderia thailandensis Bt4] gi\|167579274 - gi\|167579274\|ref\|ZP_02372148.1\| flagellar motor switch protein FliM [Burkholderia thailandensis TXDO...	347.0	[0..2]	[326..4]
gi\|71906405, gi\|... - gi\|71906405\|ref\|YP_283992.1\| flagellar motor switch protein FliM [Dechloromonas aromatica RCB], gi\|7...	347.0	[0..2]	[326..3]
gi\|42766718 - gi\|42766718\|gb\|AAS45442.1\| putative flagellar biosynthesis protein [Burkholderia pseudomallei]	346.0	[0..2]	[326..4]
gi\|46320555, gi\|... - gi\|67546876\|ref\|ZP_00424785.1\| Flagellar motor switch protein FliM [Burkholderia vietnamiensis G4], ...	346.0	[0..2]	[326..4]
gi\|77810876, gi\|... - gi\|77814131\|ref\|ZP_00813397.1\| Flagellar motor switch protein FliM [Shewanella putrefaciens CN-32], ... gi\|124546501, gi... - gi\|124546501\|ref\|ZP_01705577.1\| flagellar motor switch protein FliM [Shewanella putrefaciens 200], g... gi\|120598257, gi... - gi\|82741831\|ref\|ZP_00904543.1\| Flagellar motor switch protein FliM [Shewanella sp. W3-18-1], gi\|8272...	346.0	[0..1]	[343..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLLSQDEI DALLHGVDDV EEDNELDAVG QEARSYDFSS QDRIVRGRMP TLEIVNERFA  60
   61 RHLRISMFNM MRRAAEVSIN GVQMLKFGEY VHTLFVPTSL NMVRFHPLKG TALITMEARL 120
  121 VFILVDNFFG GDGRFHAKIE GREFTPTERR IVQLLLKIIF EDYKDAWAPV MDVEFDYLDS 180
  181 EVNPAMANIV SPTEVVVINS FHIEVDGGGG DFHITMPYSM IEPIRELLDA GVQSDK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2hp7A
Description:	No description for 2hp7A was found.

Predicted Domain #2

Region A:
Residues: [237-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDTDMRWSQA LHDEIMDVKV GFDATVVEHE LTLKDVMNFK AGDIIPIELP EYIMMRIEDL  60
   61 PTYRCKMGRS RDNLALKIYE KIPRPETVKS ELQLVTRKGK ARDISEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: