YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349392, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349392, gi|....

Description	E-value	Query Range	Subject Range
gi\|54308124, gi\|... - gi\|54308124\|ref\|YP_129144.1\| flagellar motor switch protein [Photobacterium profundum SS9], gi\|46912...	125.0	[0..3]	[124..8]
gi\|78505692, gi\|... - gi\|78686528\|ref\|ZP_00851294.1\| Type III secretion system outer membrane O protein [Shewanella sp. AN...	124.0	[0..1]	[124..1]
gi\|113888305, gi... - gi\|78690258\|ref\|ZP_00854907.1\| Type III secretion system outer membrane O protein [Shewanella sp. MR... gi\|82406750, gi\|... - gi\|82495247\|ref\|ZP_00880824.1\| Type III secretion system outer membrane O protein [Shewanella sp. MR...	124.0	[0..1]	[124..1]
gi\|90328244, gi\|... - gi\|90411031\|ref\|ZP_01219045.1\| flagellar motor switch protein [Photobacterium profundum 3TCK], gi\|90...	124.0	[0..3]	[124..8]
gi\|77810875, gi\|... - gi\|77814130\|ref\|ZP_00813396.1\| Surface presentation of antigens (SPOA) protein [Shewanella putrefaci... gi\|124546502, gi... - gi\|124546502\|ref\|ZP_01705578.1\| flagellar motor switch protein FliN [Shewanella putrefaciens 200], g... gi\|120598258, gi... - gi\|82741832\|ref\|ZP_00904544.1\| Type III secretion system outer membrane O protein [Shewanella sp. W3...	123.0	[0..3]	[124..6]
gi\|26248215, gi\|... - gi\|26248215\|ref\|NP_754255.1\| flagellar motor switch protein FliN [Escherichia coli CFT073], gi\|26108... gi\|227837198, gi... - gi\|227885625\|ref\|ZP_04003430.1\| flagellar motor switch protein FliN [Escherichia coli 83972], gi\|227...	123.0	[0..2]	[123..14]
gi\|75239160, gi\|... - gi\|75239160\|ref\|ZP_00723137.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|218699493, gi... - gi\|218699493\|ref\|YP_002407122.1\| flagellar motor switch protein FliN [Escherichia coli IAI39], gi\|21... gi\|218432536, gi... - gi\|218705439\|ref\|YP_002412958.1\| flagellar motor switch protein FliN [Escherichia coli UMN026], gi\|2... gi\|110343644, gi... - gi\|110642052\|ref\|YP_669782.1\| flagellar motor switch protein FliN [Escherichia coli 536], gi\|1103436... gi\|215487146, gi... - gi\|215487146\|ref\|YP_002329577.1\| flagellar motor switch protein FliN [Escherichia coli O127:H6 str. ...	122.0	[0..2]	[123..14]
gi\|82543592, gi\|... - gi\|82543592\|ref\|YP_407539.1\| flagellar motor switch protein FliN [Shigella boydii Sb227], gi\|8124500...	122.0	[0..2]	[123..14]
gi\|188014151, gi... - gi\|188014151\|gb\|EDU52273.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC411... gi\|168758260, gi... - gi\|189354897\|gb\|EDU73316.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC440... gi\|168764428, gi... - gi\|189365572\|gb\|EDU83988.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC450... gi\|208740533, gi... - gi\|208820410\|ref\|ZP_03260730.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|209158364, gi... - gi\|209396964\|ref\|YP_002271062.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. ... gi\|209919368, gi... - gi\|209919368\|ref\|YP_002293452.1\| flagellar motor switch protein FliN [Escherichia coli SE11], gi\|209... gi\|217317973, gi... - gi\|217328626\|ref\|ZP_03444707.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. T... gi\|218554526, gi... - gi\|218554526\|ref\|YP_002387439.1\| flagellar motor switch protein FliN [Escherichia coli IAI1], gi\|218... gi\|218427505, gi... - gi\|218689941\|ref\|YP_002398153.1\| flagellar motor switch protein FliN [Escherichia coli ED1a], gi\|218... gi\|218695551, gi... - gi\|218695551\|ref\|YP_002403218.1\| flagellar motor switch protein FliN [Escherichia coli 55989], gi\|21... gi\|189359711, gi... - gi\|189359711\|gb\|EDU78130.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC448... gi\|187767381, gi... - gi\|187767381\|gb\|EDU31225.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC419... gi\|188999311, gi... - gi\|188999311\|gb\|EDU68297.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC407... gi\|168790294, gi... - gi\|189370215\|gb\|EDU88631.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC869... gi\|168802293, gi... - gi\|189375725\|gb\|EDU94141.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. EC508... gi\|254793596, gi... - gi\|254793596\|ref\|YP_003078433.1\| flagellar motor switching and energizing component [Escherichia col... gi\|195939252 - gi\|195939252\|ref\|ZP_03084634.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|208725150, gi... - gi\|208810634\|ref\|ZP_03252510.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|208731096, gi... - gi\|208816753\|ref\|ZP_03257873.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. E... gi\|157161417, gi... - gi\|75196001\|ref\|ZP_00706071.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|194429933, gi... - gi\|75208811\|ref\|ZP_00709095.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|75228498, gi\|... - gi\|75228498\|ref\|ZP_00715135.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|193071147, gi... - gi\|75233933\|ref\|ZP_00718386.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|192925954, gi... - gi\|75255540\|ref\|ZP_00727332.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|75511437, gi\|... - gi\|75511437\|ref\|ZP_00734112.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|194421509, gi... - gi\|83585019\|ref\|ZP_00923673.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|13362153, gi\|... - gi\|15831939\|ref\|NP_310712.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 str. Saka... gi\|187430149, gi... - gi\|75175124\|ref\|ZP_00695454.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [S... gi\|25300769, gi\|... - pir\|\|E85812 hypothetical protein fliN [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802381, gi\|... - gi\|15802381\|ref\|NP_288407.1\| flagellar motor switch protein FliN [Escherichia coli O157:H7 EDL933], ... gi\|13362153, gi\|... - gi\|15831939\|ref\|NP_310712.1\| flagellar motor switch protein [Escherichia coli O157:H7], gi\|13362153\|...	122.0	[0..2]	[123..14]
gi\|75190964, gi\|... - gi\|75190964\|ref\|ZP_00704231.1\| COG1886: Flagellar motor switch/type III secretory pathway protein [E... gi\|170521456, gi... - gi\|170683738\|ref\|YP_001743299.1\| flagellar motor switch protein FliN [Escherichia coli SMS-3-5], gi\|...	122.0	[0..2]	[123..14]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTDDDWAAA MAEQALEEAN AVGLDELVDD SQPISKAEAA KLDTILDIPV TISMEVGRSF  60
   61 ISIRNLLQLN QGSVVELDRV AGEPLDVMVN GTLIAHGEVV VVNDKFGIRL TDVISQTERI 120
  121 KKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1o6aA
Description:	Crystal structure of the c-terminal fragment of the putative flagelar motor switch protein FliN (TM0680a) from Thermotoga maritima at 1.85 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
motor activity	3.07201707618408	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.17271522721174	bayes_pls_golite062009
pyrophosphatase activity	1.12849207458848	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.10878539079436	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.10781034885807	bayes_pls_golite062009
binding	0.851616221377121	bayes_pls_golite062009
hydrolase activity	0.325371951256	bayes_pls_golite062009
protein binding	0.253452523212299	bayes_pls_golite062009
catalytic activity	0.145477743192426	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: