YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349298, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349298, gi|....

Description	E-value	Query Range	Subject Range
gi\|14970554 - gi\|14970554\|emb\|CAC44357.1\| H-NS protein [Erwinia chrysanthemi]	158.0	[0..1]	[130..42]
gi\|77977792, gi\|... - gi\|77977792\|ref\|ZP_00833232.1\| COG2916: DNA-binding protein H-NS [Yersinia intermedia ATCC 29909], g...	145.0	[0..1]	[130..1]
gi\|82495304, gi\|... - gi\|82495304\|ref\|ZP_00880881.1\| Histone-like nucleoid-structuring protein H-NS [Shewanella sp. MR-4],...	143.0	[0..1]	[130..1]
gi\|124508483, gi... - gi\|124548423\|ref\|ZP_01707099.1\| histone-like nucleoid-structuring protein H-NS [Shewanella putrefaci... gi\|146293608, gi... - gi\|146293608\|ref\|YP_001184032.1\| histone family protein nucleoid-structuring protein H-NS [Shewanell... gi\|120598314, gi... - gi\|82741343\|ref\|ZP_00904066.1\| Histone-like nucleoid-structuring protein H-NS [Shewanella sp. W3-18-...	143.0	[0..1]	[130..1]
gi\|85059348, gi\|... - gi\|85059348\|ref\|YP_455050.1\| global DNA-binding transcriptional dual regulator H-NS [Sodalis glossin...	142.0	[0..1]	[130..1]
gi\|49611782, gi\|... - gi\|50121256\|ref\|YP_050423.1\| global DNA-binding transcriptional dual regulator H-NS [Pectobacterium ...	142.0	[0..1]	[130..1]
gi\|77808235, gi\|... - gi\|77816812\|ref\|ZP_00815959.1\| Histone-like nucleoid-structuring protein H-NS [Shewanella putrefacie...	141.0	[0..1]	[130..1]
gi\|238709849, gi... - gi\|238751869\|ref\|ZP_04613355.1\| DNA-binding protein H-NS [Yersinia rohdei ATCC 43380], gi\|238709849\|... gi\|77972682, gi\|... - gi\|77972682\|ref\|ZP_00828242.1\| COG2916: DNA-binding protein H-NS [Yersinia frederiksenii ATCC 33641]...	141.0	[0..1]	[130..1]
gi\|59712238, gi\|... - gi\|59712238\|ref\|YP_205014.1\| global DNA-binding transcriptional dual regulator H-NS [Vibrio fischeri...	141.0	[0..1]	[130..40]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFLEILTH GRRFKAAVKD LSVEELRDLA AKLDKILVER ESMEAEELQA IAARNAKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1lr1A
Description:	H1 protein (H-NS)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.21550924222852	bayes_pls_golite062009
protein binding	1.37785152807615	bayes_pls_golite062009
identical protein binding	0.543551942364222	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [59-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEIRQQMEAV GLSIDDLGGV AVKASSKKRA PRPAKYQIEV DGEVIQWTGQ GRMPTVFKNE  60
   61 VNKGRSMDDF LI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.03
Match:	2jr1A
Description:	No description for 2jr1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: