YRC Public Data Repository - Protein Structure Prediction

Protein:	URK_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URK_SHEON.

Description	E-value	Query Range	Subject Range
gi\|76611769 - gi\|76611769\|ref\|XP_614178.2\| PREDICTED: similar to uridine-cytidine kinase 2 [Bos taurus]	215.0	[0..2]	[210..233]
UCK1_DANRE - Uridine-cytidine kinase 1 OS=Danio rerio GN=uck1 PE=2 SV=1	214.0	[0..3]	[210..14]
gi\|144982771 - gi\|144982771\|gb\|EDJ90300.1\| uridine kinase [Haemophilus influenzae R3021] URK_HAEIG - Uridine kinase OS=Haemophilus influenzae (strain PittGG) GN=udk PE=3 SV=1 gi\|145631637 - gi\|145631637\|ref\|ZP_01787402.1\| uridine kinase [Haemophilus influenzae 22.4-21] URK_HAEI8 - Uridine kinase OS=Haemophilus influenzae (strain 86-028NP) GN=udk PE=3 SV=1 URK_HAEIN - Uridine kinase OS=Haemophilus influenzae GN=udk PE=3 SV=1 gi\|46128859 - gi\|46128859\|ref\|ZP_00154371.2\| COG0572: Uridine kinase [Haemophilus influenzae R2846] gi\|46132963 - gi\|46132963\|ref\|ZP_00155965.2\| COG0572: Uridine kinase [Haemophilus influenzae R2866] URK_HAEIN - Uridine kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=udk PE=3 SV=...	213.0	[0..1]	[212..1]
gi\|48425793, gi\|... - gi\|48425800\|pdb\|1UJ2\|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2 Complexed With ...	211.0	[0..2]	[210..18]
gi\|26350013 - gi\|26350013\|dbj\|BAC38646.1\| unnamed protein product [Mus musculus]	209.0	[0..2]	[210..16]
URK_SHEAM - Uridine kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=udk PE=3 SV=1	208.0	[0..1]	[212..1]
gi\|46912791, gi\|... - gi\|54308363\|ref\|YP_129383.1\| uridine kinase [Photobacterium profundum SS9], gi\|46912791\|emb\|CAG19581...	207.0	[0..2]	[211..38]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSQQCVIIA IAGASASGKS LIAKTIFDEL RRDLGTDQIG VINEDAYYRD QSHLSMDERV  60
   61 LTNYDHPKAL DHQLLCTHLQ LLKSGEAVDI PCYSYTEHTR MAETVKMTPK KVIILEGILL 120
  121 LTDPKLRELM DASVFMDTPL DICFLRRLTR DVAERGRTME SVISQYKKTV RPMFLQFIEP 180
  181 SKQYADIIVP RGGKNRIATD ILKTRIQHLL AK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1udwA
Description:	Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.31021342806183	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
kinase activity	1.60827037072506	bayes_pls_golite062009
binding	1.25659194713805	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity	0.420858111948277	bayes_pls_golite062009
adenylate kinase activity	0.373057703057608	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: