YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348485, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348485, gi|....

Description	E-value	Query Range	Subject Range
gi\|113889061, gi... - gi\|78690890\|ref\|ZP_00855526.1\| Carbonate dehydratase [Shewanella sp. MR-7], gi\|78509731\|gb\|EAP23117....	262.0	[0..1]	[201..1]
gi\|82404653, gi\|... - gi\|82497288\|ref\|ZP_00882844.1\| Carbonate dehydratase [Shewanella sp. MR-4], gi\|82404653\|gb\|EAP45337....	261.0	[0..1]	[201..1]
gi\|124547212, gi... - gi\|124547212\|ref\|ZP_01706159.1\| carbonic anhydrase [Shewanella putrefaciens 200], gi\|124509364\|gb\|EA... gi\|120558793, gi... - gi\|82743458\|ref\|ZP_00906103.1\| Carbonate dehydratase [Shewanella sp. W3-18-1], gi\|82719181\|gb\|EAP541... gi\|77815085, gi\|... - gi\|77815085\|ref\|ZP_00814328.1\| Carbonate dehydratase [Shewanella putrefaciens CN-32], gi\|77809949\|gb...	259.0	[0..1]	[201..1]
gi\|255055897, gi... - gi\|255055897\|ref\|ZP_05308122.1\| Carbonate dehydratase [Pectobacterium wasabiae WPP163], gi\|254988268... gi\|50122249, gi\|... - gi\|50122249\|ref\|YP_051416.1\| carbonic anhydrase [Pectobacterium atrosepticum SCRI1043], gi\|49612775\|...	257.0	[0..1]	[201..1]
gi\|78505544, gi\|... - gi\|78686660\|ref\|ZP_00851424.1\| Carbonate dehydratase [Shewanella sp. ANA-3], gi\|78505544\|gb\|EAP19073...	257.0	[0..1]	[201..1]
gi\|126174585, gi... - gi\|68544769\|ref\|ZP_00584374.1\| Carbonate dehydratase [Shewanella baltica OS155], gi\|68517523\|gb\|EAN4... gi\|160875587, gi... - gi\|160875587\|ref\|YP_001554903.1\| carbonate dehydratase [Shewanella baltica OS195], gi\|160861109\|gb\|A...	257.0	[0..1]	[197..1]
gi\|91793167, gi\|... - gi\|91793167\|ref\|YP_562818.1\| carbonate dehydratase [Shewanella denitrificans OS217], gi\|91715169\|gb\|...	255.0	[0..1]	[197..1]
gi\|62178741, gi\|... - gi\|62178741\|ref\|YP_215158.1\| putative carbonic anhydrase [Salmonella enterica subsp. enterica serova... gi\|205347482, gi... - gi\|205360728\|ref\|ZP_02685949.2\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar H...	255.0	[0..1]	[201..18]
gi\|54310267, gi\|... - gi\|54310267\|ref\|YP_131287.1\| putative carbonic anhydrase [Photobacterium profundum SS9], gi\|46914708...	255.0	[0..1]	[201..1]
gi\|28807512 - gi\|28807512\|dbj\|BAC60777.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633] gi\|28899288, gi\|... - gi\|28899288\|ref\|NP_798893.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153839857, gi... - gi\|153839857\|ref\|ZP_01992524.1\| carbonic anhydrase [Vibrio parahaemolyticus AQ3810], gi\|149746617\|gb...	255.0	[0..1]	[201..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLKPLFDN NLRWAGRISQ EHPDFFEQLA KQQNPEYLWI GCSDSRVPSN QIIDLMPGEV  60
   61 FVHRNIANMV IHTDLNCLSV LQYAIDVLKV KHIMVVGHYG CGGVRAAMGN QRLGLIDNWL 120
  121 GHLRDVYRLH HDELMQMDEA KRFDRLCELN VIEQVSNVTS STIVQEAWAR GQELAVHGWI 180
  181 YGIDNGLLTD LDVTVDRAQV V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.221849
Match:	1i6oA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
carbon-oxygen lyase activity	1.691366175135	bayes_pls_golite062009
hydro-lyase activity	1.65497918079842	bayes_pls_golite062009
lyase activity	1.62374861994341	bayes_pls_golite062009
binding	1.32962036184517	bayes_pls_golite062009
protein binding	0.132818074687599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: