YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348395, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348395, gi|....

Description	E-value	Query Range	Subject Range
gi\|78044327, gi\|... - gi\|78044327\|ref\|YP_361012.1\| cysteine desulfurase [Carboxydothermus hydrogenoformans Z-2901], gi\|779...	280.0	[0..3]	[367..1]
gi\|20808820, gi\|... - gi\|20808820\|ref\|NP_623991.1\| cysteine sulfinate desulfinase/cysteine desulfurase [Thermoanaerobacter... gi\|20808820 - gi\|20808820\|ref\|NP_623991.1\| Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme ...	280.0	[0..3]	[367..1]
gi\|167039810, gi... - gi\|167039810\|ref\|YP_001662795.1\| cysteine desulfurase [Thermoanaerobacter sp. X514], gi\|166854050\|gb...	280.0	[0..3]	[367..1]
gi\|241903579, gi... - gi\|241903579\|ref\|ZP_04788301.1\| cysteine desulfurase NifS [Thermoanaerobacter brockii subsp. finnii ... gi\|167039427, gi... - gi\|167039427\|ref\|YP_001662412.1\| cysteine desulfurase [Thermoanaerobacter sp. X514], gi\|166853667\|gb... gi\|76588521, gi\|... - gi\|76796110\|ref\|ZP_00778478.1\| Aminotransferase, class V [Thermoanaerobacter ethanolicus ATCC 33223]...	279.0	[0..3]	[367..1]
gi\|59711224, gi\|... - gi\|59711224\|ref\|YP_204000.1\| sulfur mobilization protein for Fe-S synthesis, cysteine desulfurase (t...	277.0	[0..1]	[367..14]
gi\|194540295, gi... - gi\|75857376\|ref\|ZP_00764992.1\| COG1104: Cysteine sulfinate desulfinase/cysteine desulfurase and rela...	276.0	[0..3]	[367..1]
gi\|91225150, gi\|... - gi\|91225150\|ref\|ZP_01260372.1\| cysteine desulfurase [Vibrio alginolyticus 12G01], gi\|91190093\|gb\|EAS...	276.0	[0..3]	[367..1]
gi\|88820113, gi\|... - gi\|88858496\|ref\|ZP_01133138.1\| cysteine desulfurase [Pseudoalteromonas tunicata D2], gi\|88820113\|gb\|...	275.0	[0..3]	[367..1]
gi\|82401628, gi\|... - gi\|82500379\|ref\|ZP_00885796.1\| cysteine sulfinate desulfinase/cysteine desulfurase and related enzym...	275.0	[0..1]	[367..1]
ISCS_VIBPA - Cysteine desulfurase OS=Vibrio parahaemolyticus GN=iscS PE=3 SV=1 ISCS_VIBPA - Cysteine desulfurase IscS OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=iscS PE... gi\|153838070, gi... - gi\|153838070\|ref\|ZP_01990737.1\| cysteine desulfurase IscS [Vibrio parahaemolyticus AQ3810], gi\|14974...	274.0	[0..3]	[367..1]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSAIYNFC AGPAMLPAAV MKKAQQELLD WNGLGVSVME VSHRGKEFIA LTKQAEADLR  60
   61 ELMHIPQNYH VLFMHGGGRG QFSAVVNNFL GNQGRALYLV SGQWSSAALA EAQKLAGDAQ 120
  121 IDSLNIVEKH NCLNAVVLPD LHKIDADYRY VHYCPNETVD GIEIFDELDS PWPIVADLSS 180
  181 TIMSREIDVS RYGLIYAGAQ KNIGPSGLSI VIVRDDMLTL PSLPQSSIMD YRLAVEHDSM 240
  241 FNTPPTFAWY LAAEVFAWLK SIGGVASIAK INQQKAQMLY ACIDANPFYK NGVVAANRSQ 300
  301 MNVTFQLADE SLDGAFLKEA EAVGLVALKG HRIVGGMRAS LYNAMPLEGV AALVTFMNEF 360
  361 AAKHYNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.39794
Match:	1bjnA
Description:	Phosphoserine aminotransferase, PSAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.29878871754893	bayes_pls_golite062009
O-phospho-L-serine:2-oxoglutarate aminotransferase activity	2.1692959843619	bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity	1.80372125032222	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor	1.80372125032222	bayes_pls_golite062009
transferase activity	1.44093490824786	bayes_pls_golite062009
5-aminolevulinate synthase activity	1.42214433786345	bayes_pls_golite062009
transferase activity, transferring nitrogenous groups	1.28316822767388	bayes_pls_golite062009
transaminase activity	1.24990480711889	bayes_pls_golite062009
L-aspartate:2-oxoglutarate aminotransferase activity	0.81652984148807	bayes_pls_golite062009
transcription regulator activity	0.636782746250952	bayes_pls_golite062009
nucleic acid binding	0.526698053525422	bayes_pls_golite062009
DNA binding	0.516618701017633	bayes_pls_golite062009
binding	0.450641761940864	bayes_pls_golite062009
structural molecule activity	0.347975812448725	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	0.271623203801431	bayes_pls_golite062009
transcription factor activity	0.188693175079415	bayes_pls_golite062009
pyridoxal phosphate binding	0.16957228630576	bayes_pls_golite062009
vitamin B6 binding	0.16957228630576	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: