YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348282, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348282, gi|....

Description	E-value	Query Range	Subject Range
gi\|111153440, gi... - gi\|111225908\|ref\|YP_716702.1\| anti-sigma-B factor antagonist (anti-anti-sigma-B factor) [Frankia aln...	96.0	[0..1]	[106..3]
gi\|15895575, gi\|... - gi\|15895575\|ref\|NP_348924.1\| anti-anti-sigma factor (antagonist of SpoIIAB) [Clostridium acetobutyli... gi\|25299040 - pir\|\|E97184 anti-anti-sigma factor (antagonist of SpoIIAB) [imported] - Clostridium acetobutylicum	96.0	[0..1]	[106..1]
gi\|86569839, gi\|... - gi\|86742977\|ref\|YP_483377.1\| anti-sigma-factor antagonist domain-containing protein [Frankia sp. CcI...	96.0	[0..1]	[106..3]
gi\|158312176, gi... - gi\|68229180\|ref\|ZP_00568377.1\| Anti-sigma factor antagonist [Frankia sp. EAN1pec], gi\|68203136\|gb\|EA...	95.0	[0..1]	[106..3]
gi\|196199365, gi... - gi\|196251402\|ref\|ZP_03150072.1\| anti-sigma-factor antagonist [Clostridium thermocellum DSM 4150], gi... gi\|125972642, gi... - gi\|67874109\|ref\|ZP_00504014.1\| Anti-sigma factor antagonist [Clostridium thermocellum ATCC 27405], g...	94.0	[0..1]	[106..1]
gi\|29831157, gi\|... - gi\|29831157\|ref\|NP_825791.1\| anti-sigma factor antagonist [Streptomyces avermitilis MA-4680], gi\|296...	94.0	[0..1]	[106..3]
gi\|220931544, gi... - gi\|89210648\|ref\|ZP_01189035.1\| Anti-sigma factor antagonist [Halothermothrix orenii H 168], gi\|89159...	94.0	[0..1]	[106..1]
RSBV_STRCO - Anti-sigma-B factor antagonist OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rs... RSBV_STRCO - Anti-sigma-B factor antagonist OS=Streptomyces coelicolor GN=rsbV PE=1 SV=1	93.0	[0..1]	[106..3]
gi\|88931500, gi\|... - gi\|88931500\|ref\|ZP_01137194.1\| Anti-sigma factor antagonist [Acidothermus cellulolyticus 11B], gi\|88...	93.0	[0..1]	[106..3]
gi\|72163454, gi\|... - gi\|72163454\|ref\|YP_291111.1\| anti-sigma factor antagonist [Thermobifida fusca YX], gi\|71917186\|gb\|AA...	93.0	[0..1]	[106..38]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINIVLKDQ SIKVNLTEEL TIYSVMEFRD ALVGHLQPGV DISVDLSQVT EVDTAGLQWL  60
   61 LALKGLNVVQ RVEFCHHSKA VIDALELSGL SGTFDDTIVI SSEVRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1sboA
Description:	Solution Structure of putative anti sigma factor antagonist from Thermotoga maritima (TM1442)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.51984028488182	bayes_pls_golite062009
protein binding	0.99113615143823	bayes_pls_golite062009
transcription regulator activity	0.893093767470901	bayes_pls_golite062009
antisigma factor binding	0.52065892308738	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: