| Protein: | gi|24348243, gi|... |
| Organism: | Shewanella oneidensis MR-1 |
| Length: | 585 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348243, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
362.0 | [0..3] | [554..74] |
|
|
362.0 | [0..6] | [573..109] |
|
|
353.0 | [0..3] | [554..78] |
|
|
353.0 | [0..3] | [554..78] |
|
|
352.0 | [0..3] | [554..76] |
|
|
351.0 | [0..3] | [554..78] |
|
|
349.0 | [0..6] | [556..83] |
|
Region A: Residues: [1-178] |
1 11 21 31 41 51
| | | | | |
1 MKFPSLVSFM PGLALMLQYE KQWLRDDVRA GLSVAAVALP VAIAYAQLTG VNAAVGLYSC 60
61 VLPMLVYALF GTSRQLIVGP DAATCAVIAA VVTPLAAGDS MKHWQLVMTM TAMTGFWCLI 120
121 ASRFRLGVLA DFLSKPILMG LLNGVAITII VGQFSKIFGF TFDERYLIER LSGAPSYL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [179-431] |
1 11 21 31 41 51
| | | | | |
1 TKTHWPTLLM GLVTLLTYAL VKRYRPQWPA SMCAMAVAAF LVWAFNLTSF NINVVGEVSA 60
61 GLPSFQAPVF DIGIARELVV PALNLAMVSF VSMMLTARSF AAKNGYDIDA DKEFRALGIA 120
121 NIASALSQGF AVSGADSRTA VNDANGGKSQ LVSIIAAVLI ALVALFFTAP LKYIPSSALG 180
181 VVLVIASISL IDLKALWNLR VRDRSAFLLA CTTLFSVLFI GVIPGITLAV LLGLFQFLAT 240
241 VMRPTDQVLG LDH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [432-585] |
1 11 21 31 41 51
| | | | | |
1 KGVIRSVDDS GKAKSVPGVF IYRFNSPLTY FNATYFKRRL LEKFIREPDP VDCIIIDAVP 60
61 CFTHLDLSVM AMLADLHQLL KKRGIRLVLA GRKRQMLGWF EQAGMQSGEG GILIRPDLYL 120
121 ALKMNQSYKQ ALAEGQAPVI KKAPEDDVLL YSHL
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | 1auzA |
| Description: | SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.97991551312897 | bayes_pls_golite062009 |
| protein binding | 1.39062728142841 | bayes_pls_golite062009 |
