YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347793, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347793, gi|....

Description	E-value	Query Range	Subject Range
gi\|126174729, gi... - gi\|68542108\|ref\|ZP_00581844.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa... gi\|160861263, gi... - gi\|160875741\|ref\|YP_001555057.1\| succinate dehydrogenase iron-sulfur subunit [Shewanella baltica OS1... gi\|151365646, gi... - gi\|153001028\|ref\|YP_001366709.1\| succinate dehydrogenase iron-sulfur subunit [Shewanella baltica OS1... gi\|217973012, gi... - gi\|217973012\|ref\|YP_002357763.1\| succinate dehydrogenase iron-sulfur subunit [Shewanella baltica OS2...	241.0	[0..1]	[235..1]
gi\|91793538, gi\|... - gi\|91793538\|ref\|YP_563189.1\| succinate dehydrogenase iron-sulfur subunit [Shewanella denitrificans O...	240.0	[0..1]	[235..1]
gi\|2239250 - gi\|2239250\|emb\|CAA74088.1\| succinate dehydrogenase putative iron sulphur subunit [Shewanella frigidi... gi\|114563515, gi... - gi\|69951150\|ref\|ZP_00638917.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	240.0	[0..1]	[235..1]
gi\|120598555, gi... - gi\|82740604\|ref\|ZP_00903342.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	238.0	[0..1]	[235..1]
gi\|119774563, gi... - gi\|68546937\|ref\|ZP_00586480.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	238.0	[0..1]	[235..1]
gi\|88794850, gi\|... - gi\|88794850\|ref\|ZP_01110554.1\| succinate dehydrogenase catalytic subunit [Alteromonas macleodii 'Dee... gi\|239993977 - gi\|239993977\|ref\|ZP_04714501.1\| succinate dehydrogenase catalytic subunit [Alteromonas macleodii ATC...	238.0	[0..1]	[235..1]
gi\|77808366, gi\|... - gi\|77816675\|ref\|ZP_00815843.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	238.0	[0..1]	[235..1]
gi\|113969974, gi... - gi\|82496022\|ref\|ZP_00881594.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa... gi\|117920156, gi... - gi\|78685698\|ref\|ZP_00850474.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	236.0	[0..1]	[235..1]
gi\|78690463, gi\|... - gi\|78690463\|ref\|ZP_00855109.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Shewa...	235.0	[0..1]	[235..1]
gi\|76590323, gi\|... - gi\|76794413\|ref\|ZP_00776883.1\| Succinate dehydrogenase/fumarate reductase iron-sulfur protein [Pseud...	233.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEFAVYRY NPDVDTKPYM QDYSLEVADG TDMMVLDALI KLKEKDPTLV FRRSCREGVC  60
   61 GSDGLNMNGK NGLACITPVS TFKGKKLEIR PLPGMPVVRD LVVDLTQFYK QYEKIKPFLI 120
  121 NDDKQPAREH LQSPEQRAHL DGLYECIMCA CCSTACPSFW WNPDKFIGPS GLLHAYRFLI 180
  181 DSRDTATEER LSELDDAYSV FRCHGIMNCV DVCPKGLNPT KAIGHIKSML LKRAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1nekB
Description:	Succinate dehydogenase; Succinate dehydogenase iron-sulfur protein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase (ubiquinone) activity	8.67170708058767	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	8.67170708058767	bayes_pls_golite062009
electron carrier activity	5.46307392364196	bayes_pls_golite062009
succinate dehydrogenase activity	5.17247395944711	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	4.95798078106244	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	4.38887210619429	bayes_pls_golite062009
oxidoreductase activity	4.24568355093737	bayes_pls_golite062009
NADH dehydrogenase activity	4.24327638063454	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	4.15859537745252	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	3.78210410787032	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	3.67682177056786	bayes_pls_golite062009
iron-sulfur cluster binding	3.28424324316751	bayes_pls_golite062009
metal cluster binding	3.28424324316751	bayes_pls_golite062009
binding	1.29066915338738	bayes_pls_golite062009
protein binding	0.507343948317508	bayes_pls_golite062009
catalytic activity	0.105119876745552	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: