YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347744, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347744, gi|....

Description	E-value	Query Range	Subject Range
gi\|115379577, gi... - gi\|115379577\|ref\|ZP_01466665.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...	271.0	[0..1]	[218..1]
gi\|108756835, gi... - gi\|108756835\|ref\|YP_631971.1\| 3-oxoacid CoA-transferase subunit B [Myxococcus xanthus DK 1622], gi\|1...	268.0	[0..1]	[216..1]
tr\|E4REJ0\|E4REJ0... - 3-oxoacid CoA-transferase, B subunit OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_2612 PE=4 SV=... gi\|82736381, gi\|... - gi\|82736381\|ref\|ZP_00899239.1\| Coenzyme A transferase active site [Pseudomonas putida F1], gi\|827164... tr\|I7AWC7\|I7AWC7... - 3-oxoacid CoA-transferase, B subunit OS=Pseudomonas putida (strain DOT-T1E) GN=ipsJ PE=4 SV=1	265.0	[0..1]	[218..1]
gi\|26989842, gi\|... - gi\|26989842\|ref\|NP_745267.1\| 3-oxoacid CoA-transferase subunit B [Pseudomonas putida KT2440], gi\|249...	265.0	[0..1]	[218..1]
gi\|104781575, gi... - gi\|95110562\|emb\|CAK15270.1\| acetoacetyl-CoA transferase, beta subunit [Pseudomonas entomophila L48],... gi\|95110562 - gi\|95110562\|emb\|CAK15270.1\| acetoacetyl-CoA transferase, beta subunit [Pseudomonas entomophila L48]	263.0	[0..1]	[218..1]
gi\|66781233, gi\|... - gi\|94984916\|ref\|YP_604280.1\| 3-oxoacid CoA-transferase, subunit B [Deinococcus geothermalis DSM 1130...	261.0	[0..1]	[209..1]
gi\|39575773, gi\|... - gi\|42523567\|ref\|NP_968947.1\| 3-oxoacid CoA-transferase subunit B [Bdellovibrio bacteriovorus HD100],...	259.0	[0..1]	[218..1]
gi\|83853110, gi\|... - gi\|83858287\|ref\|ZP_00951809.1\| 3-oxoadipate CoA-transferase, beta subunit [Oceanicaulis alexandrii H...	258.0	[0..1]	[213..1]
gi\|77382305, gi\|... - gi\|77458302\|ref\|YP_347807.1\| butyryl-CoA:acetate CoA transferase [Pseudomonas fluorescens Pf0-1], gi...	258.0	[0..1]	[218..1]
gi\|15807735, gi\|... - gi\|6460542\|gb\|AAF12248.1\|AE001862_74 CoA transferase, subunit B [Deinococcus radiodurans R1], gi\|158... gi\|7471251 - pir\|\|E75600 butyrate-acetoacetate CoA-transferase (EC 2.8.3.9) large chain homolog DRA0067 [similari...	257.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSREQLAQ RVAKELQDGY YVNLGIGIPT LVANYIPEGM EVMLQSENGL LGMGEFPTEE  60
   61 TIDPDLINAG KQTVTAVKGA SFFSSAESFA MIRGGHVDLT VLGAFEVDVN GSIASWMIPG 120
  121 KLIKGMGGAM DLVAGAENII VTMMHADKYG NSKLLPVCEL PLTGYGCIKR VVTDLAFIEI 180
  181 KDGAFHLLER APGVSVEEIV SKTAGKLIVP DHVPEMVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.221849
Match:	1m3eA
Description:	Succinate:CoA transferase, N-terminal domain; Succinate:CoA transferase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: