YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPP_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPP_SHEON.

Description	E-value	Query Range	Subject Range
CLPP_VIBTL - ATP-dependent Clp protease proteolytic subunit OS=Vibrio tasmaniensis (strain LGP32) GN=clpP PE=3 SV... gi\|84387735, gi\|... - gi\|84387735\|ref\|ZP_00990751.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus 12B...	277.0	[0..2]	[202..7]
gi\|85833328, gi\|... - gi\|86148885\|ref\|ZP_01067136.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222], g...	276.0	[0..6]	[202..1]
gi\|90579278, gi\|... - gi\|90579278\|ref\|ZP_01235088.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio angustum S14],... gi\|89073230, gi\|... - gi\|89073230\|ref\|ZP_01159760.1\| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp. SK...	275.0	[0..2]	[201..7]
CLPP_SHEB5 - ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) ... CLPP_SHEB8 - ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS185) GN=clpP PE=3 SV=... CLPP_SHEB2 - ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS223) GN=clpP PE=3 SV=... CLPP_SHEB9 - ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS195) GN=clpP PE=3 SV=...	275.0	[0..1]	[202..1]
gi\|91187849, gi\|... - gi\|91228617\|ref\|ZP_01262535.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio alginolyticus ... gi\|75853478, gi\|... - gi\|75853478\|ref\|ZP_00761324.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Vibrio sp. ...	274.0	[0..2]	[202..7]
CLPP_VIBPA - ATP-dependent Clp protease proteolytic subunit OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIM... CLPP_VIBPA - ATP-dependent Clp protease proteolytic subunit OS=Vibrio parahaemolyticus GN=clpP PE=3 SV=1	273.0	[0..4]	[202..1]
gi\|121727845, gi... - gi\|75814907\|ref\|ZP_00745448.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Vibrio chol... gi\|229511781, gi... - gi\|229511781\|ref\|ZP_04401260.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae B33]... gi\|229507982, gi... - gi\|229507982\|ref\|ZP_04397487.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX 3... gi\|229518918, gi... - gi\|229518918\|ref\|ZP_04408361.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae RC9]... gi\|229515308, gi... - gi\|229515308\|ref\|ZP_04404768.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA ... gi\|229529052, gi... - gi\|229529052\|ref\|ZP_04418442.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae 1212... gi\|229337523, gi... - gi\|229523942\|ref\|ZP_04413347.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv. ... gi\|229607528, gi... - gi\|229607528\|ref\|YP_002878176.1\| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae MJ-... gi\|254844715, gi... - gi\|75830738\|ref\|ZP_00760010.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Vibrio chol... gi\|116214947, gi... - gi\|75821589\|ref\|ZP_00751429.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Vibrio chol... gi\|75827244 - gi\|75827244\|ref\|ZP_00756679.1\| COG0740: Protease subunit of ATP-dependent Clp proteases [Vibrio chol... tr\|D7H9Y6\|D7H9Y6... - ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae GN=clpP PE=3 SV=1, ATP-dependent C...	273.0	[0..2]	[202..7]
CLPP_THIDA - ATP-dependent Clp protease proteolytic subunit OS=Thiobacillus denitrificans (strain ATCC 25259) GN=...	273.0	[0..4]	[201..10]
CLPP_VIBCH - ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae GN=clpP PE=3 SV=1 CLPP_VIBC3 - ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / C... CLPP_VIBCH - ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / E... gi\|153824129, gi... - gi\|153824129\|ref\|ZP_01976796.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholera... CLPP_VIBCM - ATP-dependent Clp protease proteolytic subunit OS=Vibrio cholerae serotype O1 (strain M66-2) GN=clpP... gi\|150423008, gi... - gi\|254286858\|ref\|ZP_04961810.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholera... gi\|149739876, gi... - gi\|153826398\|ref\|ZP_01979065.1\| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio cholera...	273.0	[0..4]	[202..1]
CLPP_SHESR - ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain MR-7) GN=clpP PE=3 SV=1	273.0	[0..1]	[202..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNASDIQSA LVPMVIEQTA KGERSFDIYS RLLKERIIFL VGQVEEHMAN LIVAQLLFLE  60
   61 SESPDKDIFL YINSPGGSVT AGMAIYDTMQ FIKPNVSTVC IGQAASMGAF LLAGGEKGKR 120
  121 FCLPNSRVMI HQPLGGFQGQ ASDIAIHAQE ILGIKNKLNQ MLADHTGQPL EVIERDTDRD 180
  181 NFMSATQAVE YGLVDAVMTK RG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.045757
Match:	1tyfA
Description:	Clp protease, ClpP subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.46154163027498	bayes_pls_golite062009
CoA carboxylase activity	0.939626895227199	bayes_pls_golite062009
acetyl-CoA carboxylase activity	0.764444938444292	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.621229080200493	bayes_pls_golite062009
enoyl-CoA hydratase activity	0.620657548610719	bayes_pls_golite062009
hydrolase activity	0.534319520590169	bayes_pls_golite062009
binding	0.367666848528835	bayes_pls_golite062009
ligase activity	0.32092496884003	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: