YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373293, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373293, gi|....

Description	E-value	Query Range	Subject Range
gi\|77977952, gi\|... - gi\|77977952\|ref\|ZP_00833389.1\| COG0704: Phosphate uptake regulator [Yersinia intermedia ATCC 29909],...	216.0	[0..1]	[234..1]
gi\|77958177, gi\|... - gi\|77958177\|ref\|ZP_00822215.1\| COG0704: Phosphate uptake regulator [Yersinia bercovieri ATCC 43970],...	216.0	[0..1]	[236..1]
gi\|166205645, gi... - gi\|166213347\|ref\|ZP_02239382.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|167401532, gi... - gi\|167401532\|ref\|ZP_02307026.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|167425542, gi... - gi\|167425542\|ref\|ZP_02317295.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|145601160, gi... - gi\|145601160\|ref\|YP_001165236.1\| transcriptional regulator PhoU [Yersinia pestis Pestoides F], gi\|14... gi\|186897478, gi... - gi\|186897478\|ref\|YP_001874590.1\| transcriptional regulator PhoU [Yersinia pseudotuberculosis PB1/+],... gi\|108782061, gi... - gi\|108810148\|ref\|YP_654064.1\| transcriptional regulator PhoU [Yersinia pestis Antiqua], gi\|108782061... Q663R6\|Q663R6_YERPS - Phosphate transport regulatory protein - Yersinia pseudotuberculosis gi\|51591525, gi\|... - gi\|51598243\|ref\|YP_072434.1\| transcriptional regulator PhoU [Yersinia pseudotuberculosis IP 32953], ... gi\|108814130, gi... - gi\|229904671\|ref\|ZP_04519782.1\| negative regulator of PhoR/PhoB two-component regulator [Yersinia pe... gi\|45443743, gi\|... - gi\|45443743\|ref\|NP_995282.1\| transcriptional regulator PhoU [Yersinia pestis biovar Microtus str. 91... gi\|22127995, gi\|... - gi\|22127995\|ref\|NP_671418.1\| transcriptional regulator PhoU [Yersinia pestis KIM], gi\|21961142\|gb\|AA... gi\|162419718, gi... - gi\|77634101\|ref\|ZP_00796209.1\| COG0704: Phosphate uptake regulator [Yersinia pestis Angola], gi\|1624... gi\|152962140, gi... - gi\|77630946\|ref\|ZP_00793532.1\| COG0704: Phosphate uptake regulator [Yersinia pseudotuberculosis IP 3... gi\|229700221, gi... - gi\|229896783\|ref\|ZP_04511946.1\| negative regulator of PhoR/PhoB two-component regulator [Yersinia pe...	215.0	[0..1]	[234..1]
gi\|77961808, gi\|... - gi\|77961808\|ref\|ZP_00825638.1\| COG0704: Phosphate uptake regulator [Yersinia mollaretii ATCC 43969],...	215.0	[0..1]	[234..1]
gi\|83574855, gi\|... - gi\|83591941\|ref\|YP_425693.1\| phosphate uptake regulator, PhoU [Rhodospirillum rubrum ATCC 11170], gi... gi\|48763369 - ref\|ZP_00267924.1\| COG0704: Phosphate uptake regulator [Rhodospirillum rubrum]	215.0	[0..5]	[228..1]
gi\|238724196, gi... - gi\|77973792\|ref\|ZP_00829337.1\| COG0704: Phosphate uptake regulator [Yersinia frederiksenii ATCC 3364...	215.0	[0..1]	[234..1]
gi\|90414597, gi\|... - gi\|90414597\|ref\|ZP_01222570.1\| Putative phosphate transport system regulatory protein PhoU [Photobac... gi\|46912352, gi\|... - gi\|54307926\|ref\|YP_128946.1\| transcriptional regulator PhoU [Photobacterium profundum SS9], gi\|46912...	214.0	[0..1]	[235..2]
gi\|15982002, gi\|... - gi\|218931089\|ref\|YP_002348964.1\| transcriptional regulator PhoU [Yersinia pestis CO92], gi\|16124221\|... gi\|25300312 - pir\|\|AE0499 probable phosphate transport system protein phoU [imported] - Yersinia pestis (strain CO... gi\|229839821, gi... - gi\|229839821\|ref\|ZP_04459980.1\| negative regulator of PhoR/PhoB two-component regulator [Yersinia pe... gi\|229841906, gi... - gi\|229841906\|ref\|ZP_04462062.1\| negative regulator of PhoR/PhoB two-component regulator [Yersinia pe... gi\|89104500, gi\|... - gi\|89104500\|ref\|ZP_01177041.1\| COG0704: Phosphate uptake regulator [Yersinia pestis biovar Orientali... gi\|165991498, gi... - gi\|166009576\|ref\|ZP_02230474.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|165926131, gi... - gi\|165926131\|ref\|ZP_02221963.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|167468124 - gi\|167468124\|ref\|ZP_02332828.1\| transcriptional regulator PhoU [Yersinia pestis FV-1] gi\|166958252, gi... - gi\|167422860\|ref\|ZP_02314613.1\| phosphate transport system regulatory protein PhoU [Yersinia pestis ... gi\|150260953, gi... - gi\|150260953\|ref\|ZP_01917681.1\| putative phosphate transport system protein [Yersinia pestis CA88-41...	213.0	[0..1]	[234..1]
gi\|67845242 - gi\|67845242\|emb\|CAH41987.1\| phosphate regulon repressor protein [Erwinia amylovora]	213.0	[0..1]	[234..1]
gi\|49613915, gi\|... - gi\|50123389\|ref\|YP_052556.1\| transcriptional regulator PhoU [Pectobacterium atrosepticum SCRI1043], ...	212.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENMNLNKHI SGQFNAELED IRNRVLAMGG LVERQLEQAI DALSTLDAEL AQKVILGDHK  60
   61 VNGMEVSIDE ECTRIIAKRQ PAASDLRMII AISKSIADLE RIGDACVRIA KAALDKRLNN 120
  121 QQPLLVSIEN MGRHAIRMLH ATLDALARMD AESALELHKE DAKLDREYEG IIRQLMTYMM 180
  181 EDPRSIPDVL DVLWAARAVE RVGDRCKNIC EYIIYYVKGK DVRHTSYEDM EKDMKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1t72A
Description:	Crystal structure of phosphate transport system protein phoU from Aquifex aeolicus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.52706367695557	bayes_pls_golite062009
nucleic acid binding	1.40207651011289	bayes_pls_golite062009
DNA binding	1.39485368870356	bayes_pls_golite062009
transcription factor activity	1.27583598395229	bayes_pls_golite062009
binding	0.775039544296942	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: