YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347349, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347349, gi|....

Description	E-value	Query Range	Subject Range
gi\|18150415 - gi\|18150415\|gb\|AAL61612.1\|AF401623_1 glutathione S-transferase [Allium cepa]	200.0	[0..1]	[204..3]
GSTF_HYOMU - Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1	198.0	[0..1]	[206..3]
gi\|116327436, gi... - gi\|116327436\|ref\|YP_797156.1\| glutathione transferase [Leptospira borgpetersenii serovar Hardjo-bovi...	196.0	[0..1]	[203..1]
gi\|116331951, gi... - gi\|116331951\|ref\|YP_801669.1\| glutathione transferase [Leptospira borgpetersenii serovar Hardjo-bovi...	195.0	[0..1]	[203..1]
gi\|61889381 - gi\|61889381\|emb\|CAI51314.2\| glutathione S-transferase GST1 [Capsicum chinense]	195.0	[0..1]	[206..3]
GSTF3_MAIZE - Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE=1 SV=4	195.0	[0..1]	[206..4]
gi\|67548282, gi\|... - gi\|67548282\|ref\|ZP_00426173.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	194.0	[0..5]	[206..326]
gi\|24216055, gi\|... - gi\|24216055\|ref\|NP_713536.1\| glutathione S-transferase [Leptospira interrogans serovar Lai str. 5660...	194.0	[0..1]	[203..1]
gi\|67104621, gi\|... - gi\|67662036\|ref\|ZP_00459327.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	193.0	[0..5]	[206..25]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLYELAPTP SARRVSIFLA EKGIVIPRVN VDIRSGENLN PEFKAKSING RIPLLELDDG  60
   61 NYLCESVAIC RYLEEIHPSE TSLFGNNPLE RAKVEMWQRI IELQGLMVGF QAFRNLTGIY 120
  121 KDRENCIEAW GAESRQRVID FLPTLDQQLA QSSYVAGDNF TIADITAYVF ISFIKNLDIL 180
  181 VDDSLPHIQA WFATMAQRPA IVSLNPKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1aw9A
Description:	STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
disulfide oxidoreductase activity	2.75329559672625	bayes_pls_golite062009
antioxidant activity	1.96600066476624	bayes_pls_golite062009
glutathione transferase activity	1.85683051472829	bayes_pls_golite062009
oxidoreductase activity	1.71351657881838	bayes_pls_golite062009
peroxidase activity	1.63725317384157	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	1.63725317384157	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.44229450804826	bayes_pls_golite062009
glutathione binding	1.1614557144978	bayes_pls_golite062009
binding	0.828696005067827	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
glutathione peroxidase activity	0.527635650858282	bayes_pls_golite062009
peroxiredoxin activity	0.366096607480921	bayes_pls_golite062009
thioredoxin peroxidase activity	0.163136748643487	bayes_pls_golite062009
hydrolase activity	0.150237022038507	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.13913802190798	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: