YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347348, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347348, gi|....

Description	E-value	Query Range	Subject Range
gi\|82404960, gi\|... - gi\|82496990\|ref\|ZP_00882551.1\| glutathione S-transferase family protein [Shewanella sp. MR-4], gi\|82...	209.0	[0..1]	[222..1]
gi\|78510967, gi\|... - gi\|78689678\|ref\|ZP_00854337.1\| glutathione S-transferase family protein [Shewanella sp. MR-7], gi\|78...	206.0	[0..1]	[222..1]
gi\|78686443, gi\|... - gi\|78686443\|ref\|ZP_00851210.1\| glutathione S-transferase family protein [Shewanella sp. ANA-3], gi\|7...	205.0	[0..1]	[222..1]
gi\|217974124, gi... - gi\|217974124\|ref\|YP_002358875.1\| Glutathione S-transferase domain protein [Shewanella baltica OS223]... gi\|125996836, gi... - gi\|68540864\|ref\|ZP_00580613.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	205.0	[0..1]	[222..1]
gi\|116327436, gi... - gi\|116327436\|ref\|YP_797156.1\| glutathione transferase [Leptospira borgpetersenii serovar Hardjo-bovi...	205.0	[0..1]	[197..1]
gi\|24216055, gi\|... - gi\|24216055\|ref\|NP_713536.1\| glutathione S-transferase [Leptospira interrogans serovar Lai str. 5660...	205.0	[0..1]	[218..1]
gi\|113908562, gi... - gi\|160874534\|ref\|YP_001553850.1\| glutathione S-transferase domain-containing protein [Shewanella bal...	205.0	[0..1]	[222..1]
gi\|82722205, gi\|... - gi\|82740468\|ref\|ZP_00903208.1\| glutathione S-transferase family protein [Shewanella sp. W3-18-1], gi...	205.0	[0..1]	[222..1]
gi\|116331951, gi... - gi\|116331951\|ref\|YP_801669.1\| glutathione transferase [Leptospira borgpetersenii serovar Hardjo-bovi...	204.0	[0..1]	[197..1]
gi\|119774224, gi... - gi\|68547164\|ref\|ZP_00586704.1\| Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-te...	204.0	[0..1]	[222..1]

Back

Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDLYTAATP NGFKISIALE EMGLDYRVHK LDFSTNEQKQ PEFLAINPNG RIPAIIDRDN  60
   61 DDFVVFESGA ILLYLAEKTG QFLPADPKKR SQVIQWLMFQ MSGVGPMMGQ ANVFYRYFPE 120
  121 KIPAAIERYQ KEGRRLFEVM DTQLAKHQYL AGDEYTIADI ATWPWVRIHE WSGINMVGLS 180
  181 HLQRWLDELA LRPACQKGIV TPPPAIMTDE ERAKQIQKMV TK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.39794
Match:	1jzrA
Description:	Yeast prion protein ure2p, nitrogen regulation fragment
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.26520127994042	bayes_pls_golite062009
peroxidase activity	3.04028765378214	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.04028765378214	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
glutathione peroxidase activity	2.012364779649	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
glutathione transferase activity	1.85683051472829	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
selenium binding	1.57446915214149	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
glutathione binding	1.1614557144978	bayes_pls_golite062009
protein disulfide isomerase activity	0.866317336989678	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	0.866317336989678	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	0.748123488370707	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
binding	0.274799360132997	bayes_pls_golite062009
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	0.250605261094039	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: