YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373127, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373127, gi|....

Description	E-value	Query Range	Subject Range
gi\|83652834, gi\|... - gi\|83719009\|ref\|YP_441655.1\| outer membrane porin OpcP [Burkholderia thailandensis E264], gi\|8365283...	233.0	[0..3]	[321..50]
gi\|76578743, gi\|... - gi\|76809290\|ref\|YP_334925.1\| outer membrane porin [Burkholderia pseudomallei 1710b], gi\|76578743\|gb\|... gi\|225928352, gi... - gi\|226199606\|ref\|ZP_03795162.1\| outer membrane porin [Burkholderia pseudomallei Pakistan 9], gi\|2259... gi\|160694829, gi... - gi\|254178915\|ref\|ZP_04885569.1\| putative outer membrane porin [Burkholderia mallei ATCC 10399], gi\|1...	232.0	[0..3]	[321..50]
gi\|78063693, gi\|... - gi\|78063693\|ref\|YP_373601.1\| outer membrane protein (porin) [Burkholderia sp. 383], gi\|77971578\|gb\|A...	230.0	[0..4]	[321..1]
gi\|3925488 - gi\|3925488\|gb\|AAC79483.1\| outer membrane protein I precursor [Neisseria gonorrhoeae]	226.0	[0..4]	[321..1]
gi\|84360685 - gi\|84360685\|ref\|ZP_00985381.1\| COG3203: Outer membrane protein (porin) [Burkholderia dolosa AUO158]	225.0	[0..4]	[321..1]
OMPB_NEIMA, OMB_... - Major outer membrane protein P.IB OS=Neisseria meningitidis serogroup A GN=porB PE=3 SV=1, (P57042) ... gi\|11277511 - pir\|\|D81956 porin, major outer membrane protein P.I NMA0398 [imported] - Neisseria meningitidis (str... OMPB_NEIMA - Major outer membrane protein P.IB OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491)...	224.0	[0..4]	[321..1]

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Predicted Domain #1

Region A:
Residues: [1-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVFCKTLLA SALASATLAS AYAAEPLTVY GKLNVTAQSN DENGDATTTI QSNASRFGVK  60
   61 GDFELSSSLS AFYTVEYQVD TGAASSDNFT ARNQFVGLKG DFGSFSVGRN DTLLKISQGD 120
  121 VDQFNDLSGD LGKLFKGEVR AAQTATYLTP SFGDFVFGVT YVAEGNDVKS QFAQDGFSVA 180
  181 AMYGDAKLKK TAVYAALAYD SDVSGYEVLR ASLQAKLAGI KLGGMYQQQE QTYKLDKTTS 240
  241 LPVEVTAESA TGYLLSAAYD INAVTLKAQF QDMEDLGDSW SVGADYNLGK PTKVFAFYTN 300
  301 RSLEANTDDD KYIAIGLEHK F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1phoA
Description:	CRYSTAL STRUCTURES EXPLAIN FUNCTIONAL PROPERTIES OF TWO E. COLI PORINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	1.92781696559954	bayes_pls_golite062009
substrate-specific transporter activity	0.980330358908048	bayes_pls_golite062009
binding	0.832620467756177	bayes_pls_golite062009
protein binding	0.074621060225547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: