YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24347248, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	750 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24347248, gi|....

Description	E-value	Query Range	Subject Range
gi\|113971092, gi... - gi\|82496070\|ref\|ZP_00881641.1\| Glycogen debranching enzyme GlgX [Shewanella sp. MR-4], gi\|82405874\|g...	606.0	[0..1]	[750..1]
gi\|78506972, gi\|... - gi\|78685324\|ref\|ZP_00850103.1\| Glycogen debranching enzyme GlgX [Shewanella sp. ANA-3], gi\|78506972\|...	605.0	[0..1]	[750..1]
gi\|113889768, gi... - gi\|78690411\|ref\|ZP_00855058.1\| Glycogen debranching enzyme GlgX [Shewanella sp. MR-7], gi\|78510217\|g...	604.0	[0..1]	[750..1]
gi\|107101584 - gi\|107101584\|ref\|ZP_01365502.1\| hypothetical protein PaerPA_01002628 [Pseudomonas aeruginosa PACS2]	601.0	[0..14]	[747..9]
gi\|91778782, gi\|... - gi\|91778782\|ref\|YP_553990.1\| glycogen operon protein GlgX [Burkholderia xenovorans LB400], gi\|916914...	601.0	[0..7]	[747..1]
gi\|11351345 - pir\|\|C83375 probable glycosyl hydrolase PA2160 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|254235186, gi... - gi\|84321149\|ref\|ZP_00969511.1\| COG1523: Type II secretory pathway, pullulanase PulA and related glyc... gi\|15597356, gi\|... - gi\|9948179\|gb\|AAG05548.1\|AE004643_1 probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218891888, gi... - gi\|218891888\|ref\|YP_002440755.1\| putative glycosyl hydrolase [Pseudomonas aeruginosa LESB58], gi\|218...	601.0	[0..14]	[747..9]
gi\|116050103, gi... - gi\|53728095\|ref\|ZP_00139849.2\| COG1523: Type II secretory pathway, pullulanase PulA and related glyc...	601.0	[0..14]	[747..9]
gi\|254240588, gi... - gi\|84327458\|ref\|ZP_00975477.1\| COG1523: Type II secretory pathway, pullulanase PulA and related glyc...	601.0	[0..14]	[747..9]
gi\|150960001, gi... - gi\|94414076\|ref\|ZP_01293941.1\| hypothetical protein PaerP_01004084 [Pseudomonas aeruginosa PA7], gi\|...	600.0	[0..14]	[747..9]
gi\|82739818, gi\|... - gi\|82739818\|ref\|ZP_00902603.1\| Glycogen debranching enzyme GlgX [Pseudomonas putida F1], gi\|82713098...	599.0	[0..1]	[742..31]

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Predicted Domain #1

Region A:
Residues: [1-750]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAALINSG GSLPYSVSAG KAFPLGATVD DGGVNFALFS AHATGVELCL FDAQGKVEIQ  60
   61 RIALTEQTQQ IWHLYVHGLC AGQLYGYRVY GPYEPQLGHR FNPHKLLLDP YARQLVGRYH 120
  121 HHIANFGYEL DNPNEDLSFS TLDNAAYMPK CKVVDIRPLL AAAESQAIRP LSPHRNPLPI 180
  181 EQCIIYEMHL KGFTALHPEI DVPLRGTFAG LASKAAIDYL VKLGVNCVEL LPIQAFFSEP 240
  241 FLLEKQLSNY WGYNSIGFFA PEPSYLSSED IIEFRTMVDA LHGAGIEVIL DVVYNHSAEG 300
  301 SRLGPTFSFR GIDNLSYYRL HPNDKRFYIN DTGCGNTLNL NHPRMLQLVL DSLRYWVKVM 360
  361 GVDGFRFDLA ASLGREAYGF DPGSGFFDAL LQDPVLCRVK LIAEPWDIGP GGYQLGNFPV 420
  421 AFSEWNDRYR DTMRRFWRGD HGMLPEFARR FHGSGDFFEH SGRPPAASIN FLTSHDGFTL 480
  481 KDLVSYCERH NWANGEENRD GHHANFSYHY GVEGASNDVS VLVLRARQQR NLLTTLFLSQ 540
  541 GVPMLLSGDE TGRTQGGNNN AYCQDNPMNW FDWSSEGMDK HLLSFTQQLI ALRKRFPLLC 600
  601 AKRFIHEQLV ARSLESPSES PLGAAKFLTQ PSARLDWFSR QGKPMTKSLW SESMCRSLCV 660
  661 VLSGDLTAGI DVAGDNSFQA LLLMVNADEH PLAFTPPVFE HLGPWQCLLH TQTEPQYLTP 720
  721 TEPLDAQSSP TRYLLQDRSL MLFHADFIRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.09691
Match:	1bf2A
Description:	STRUCTURE OF PSEUDOMONAS ISOAMYLASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on glycosyl bonds	3.1190602686215	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	2.98773241907716	bayes_pls_golite062009
hydrolase activity	2.87134532188836	bayes_pls_golite062009
catalytic activity	2.22613067995402	bayes_pls_golite062009
glycogen debranching enzyme activity	1.61342226744611	bayes_pls_golite062009
1,4-alpha-glucan branching enzyme activity	0.72343541139639	bayes_pls_golite062009
chitinase activity	0.67854733864231	bayes_pls_golite062009
glucosidase activity	0.58717079348538	bayes_pls_golite062009
hexosaminidase activity	0.16438321606077	bayes_pls_golite062009
cation transmembrane transporter activity	0.15340916113777	bayes_pls_golite062009
amylase activity	0.0914002140078796	bayes_pls_golite062009
alpha-amylase activity	0.0521244165288097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: