YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373067, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	769 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373067, gi|....

Description	E-value	Query Range	Subject Range
gi\|78510219, gi\|... - gi\|78690413\|ref\|ZP_00855060.1\| Glycoside hydrolase, family 77 [Shewanella sp. MR-7], gi\|78510219\|gb\|...	904.0	[0..1]	[765..1]
gi\|117613707, gi... - gi\|78685322\|ref\|ZP_00850101.1\| Glycoside hydrolase, family 77 [Shewanella sp. ANA-3], gi\|78506970\|gb...	902.0	[0..1]	[765..1]
gi\|82496072, gi\|... - gi\|82496072\|ref\|ZP_00881643.1\| Glycoside hydrolase, family 77 [Shewanella sp. MR-4], gi\|82405876\|gb\|...	900.0	[0..1]	[765..1]
gi\|120599654, gi... - gi\|82743235\|ref\|ZP_00905893.1\| Glycoside hydrolase, family 77 [Shewanella sp. W3-18-1], gi\|82719397\|...	800.0	[0..1]	[758..1]
gi\|68543222, gi\|... - gi\|68543222\|ref\|ZP_00582934.1\| Glycoside hydrolase, family 77 [Shewanella baltica OS155], gi\|6851906...	797.0	[0..1]	[759..1]
gi\|146292350, gi... - gi\|77814239\|ref\|ZP_00813502.1\| Glycoside hydrolase, family 77 [Shewanella putrefaciens CN-32], gi\|77...	797.0	[0..1]	[758..1]
gi\|160874475, gi... - gi\|160874475\|ref\|YP_001553791.1\| 4-alpha-glucanotransferase [Shewanella baltica OS195], gi\|160859997...	795.0	[0..1]	[759..1]
gi\|28810021, gi\|... - gi\|28901474\|ref\|NP_801129.1\| 4-alpha-glucanotransferase [Vibrio parahaemolyticus RIMD 2210633], gi\|2... gi\|28810021 - gi\|28810021\|dbj\|BAC62962.1\| 4-alpha-glucanotransferase [Vibrio parahaemolyticus RIMD 2210633]	708.0	[0..123]	[755..43]
gi\|91191935, gi\|... - gi\|91223122\|ref\|ZP_01258388.1\| 4-alpha-glucanotransferase [Vibrio alginolyticus 12G01], gi\|91191935\|...	707.0	[0..123]	[755..43]
gi\|116187022, gi... - gi\|75855061\|ref\|ZP_00762724.1\| COG1640: 4-alpha-glucanotransferase [Vibrio sp. Ex25], gi\|116187022\|r...	703.0	[0..123]	[755..52]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLEKLLYLR GVGADFTDCF GQYIRIPEAD RQGILTCMLQ DTNEPHNEAE LSAVNRLTQS  60
   61 AIAAQVYQLD AQHWTQVLPA FHWCYVDEPW VCLYLPQSYR GDLLLTFKCE QGEVIVFNVP 120
  121 FSGLKPIGDY RIEESELARH GDSPFADECQ FIQYRLDLLA HEFDCCDVSE QDKLSDVSCL 180
  181 GLGYHKLSVS LGDTTSTLGD CTSGIHHAEL TARKANEFYG HFMLAPRTAY QGVMNSVAQR 240
  241 KR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [243-769]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKPWGVSVQL YSVRSDNQWG IGDFGDLEQL ITLVAEYGAD FIQLNPLHAL DIAVPEQPSP  60
   61 YSPCDRRRLN PLYIHLSSVP EFELLAEEFA ANEWQEAIAL LNTENWLDYP KVSELKYRAF 120
  121 ARLYTVFCES HLQQRTLRAQ RFHVFVKQEG ESLREFAQAE YLRSPSAIAQ DESFYLYLQF 180
  181 VAEEQLQLCQ LKAKEAGMGI GLIRDLAVGA ALQGVEVQAN SQLFCLNASI GAPPDPFAPQ 240
  241 GQNWGLTPLD PIKLKQDRYR HFIALIRANM TYCGALRIDH VMGLLRLWWW PLDKRLGQGA 300
  301 YVYYPVETLL AILCLESQRA RCVVIGEDLG LVPPDIIHRL YHAGVYSNEL FYFCKDHQGF 360
  361 KPPSQYKFQS LMMLANHDVP TLVAWWTGSD LHLRRQLDLL TTDEQLGEAL AGREQEKHQL 420
  421 VHSLISQGLL PETDIQQIDL EDLLTAWMAL GASGNSALYS VQWCDLLADR HAVNIPGTWL 480
  481 EYPNWQRRLP ITLRDAATQS TVALRLQRIA AARHLPEIAA QTDNTFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	2owcA
Description:	No description for 2owcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits