YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372903, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	1482 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372903, gi|....

Description	E-value	Query Range	Subject Range
gi\|15375027 - gi\|15375027\|gb\|AAK94787.1\| glutamate synthase large subunit [Klebsiella aerogenes]	1684.0	[0..3]	[1481..2]
gi\|77977065 - gi\|77977065\|ref\|ZP_00832525.1\| COG0069: Glutamate synthase domain 2 [Yersinia intermedia ATCC 29909]	1682.0	[0..3]	[1481..2]
gi\|75819922, gi\|... - gi\|75819922\|ref\|ZP_00749983.1\| COG0069: Glutamate synthase domain 2 [Vibrio cholerae V51], gi\|254226...	1680.0	[0..1]	[1481..1]
gi\|194539251, gi... - gi\|75855255\|ref\|ZP_00762912.1\| COG0069: Glutamate synthase domain 2 [Vibrio sp. Ex25], gi\|254229685\|...	1680.0	[0..1]	[1481..1]
gi\|194535203, gi... - gi\|75823416\|ref\|ZP_00752919.1\| COG0069: Glutamate synthase domain 2 [Vibrio cholerae RC385], gi\|2542... tr\|D7HEE8\|D7HEE8... - Glutamate synthase OS=Vibrio cholerae RC385 GN=VCRC385_01590 PE=4 SV=1	1680.0	[0..1]	[1481..1]
gi\|75816481, gi\|... - gi\|75816481\|ref\|ZP_00746950.1\| COG0069: Glutamate synthase domain 2 [Vibrio cholerae V52], gi\|121727...	1678.0	[0..1]	[1481..1]
gi\|36787300, gi\|... - gi\|37527864\|ref\|NP_931209.1\| glutamate synthase [NADPH] large chain precursor (glutamate synthase al...	1678.0	[0..3]	[1481..19]
lcl\|NC_016856.1_... - [gene=gltB] [protein=glutamate synthase subunit alpha] [protein_id=YP_005239512.1] [location=3508419... gi\|16766625, gi\|... - gi\|16766625\|ref\|NP_462240.1\| glutamate synthase subunit alpha [Salmonella typhimurium LT2], gi\|16421...	1678.0	[0..3]	[1481..2]
gi\|51597794, gi\|... - gi\|51597794\|ref\|YP_071985.1\| Glutamate synthase [NADPH] large chain precursor [Yersinia pseudotuberc... Q665L5\|Q665L5_YERPS - Glutamate synthase [NADPH] large chain - Yersinia pseudotuberculosis	1677.0	[0..3]	[1481..52]
gi\|9656947, gi\|1... - gi\|9656947\|gb\|AAF95519.1\| glutamate synthase, large subunit [Vibrio cholerae O1 biovar El Tor str. N... gi\|227082500, gi... - gi\|227082500\|ref\|YP_002811051.1\| glutamate synthase, large subunit [Vibrio cholerae M66-2], gi\|22701... gi\|11252808 - pir\|\|F82083 glutamate synthase (NADPH) (EC 1.4.1.13) large chain [similarity] - Vibrio cholerae (str... gi\|229607066, gi... - gi\|229607066\|ref\|YP_002877714.1\| glutamate synthase large subunit [Vibrio cholerae MJ-1236], gi\|2293... gi\|254849497, gi... - gi\|254849497\|ref\|ZP_05238847.1\| glutamate synthase, large subunit [Vibrio cholerae MO10], gi\|2548452... gi\|229507560, gi... - gi\|229507560\|ref\|ZP_04397065.1\| glutamate synthase large subunit [Vibrio cholerae BX 330286], gi\|229... gi\|229519380, gi... - gi\|229519380\|ref\|ZP_04408823.1\| glutamate synthase large subunit [Vibrio cholerae RC9], gi\|229344069... gi\|121547540, gi... - gi\|121588198\|ref\|ZP_01677942.1\| glutamate synthase, large subunit [Vibrio cholerae 2740-80], gi\|1215... gi\|126510324, gi... - gi\|153819134\|ref\|ZP_01971801.1\| glutamate synthase, large subunit [Vibrio cholerae NCTC 8457], gi\|12... gi\|153223051, gi... - gi\|153223051\|ref\|ZP_01953626.1\| glutamate synthase, large subunit [Vibrio cholerae MAK 757], gi\|1241... gi\|126519709, gi... - gi\|229512244\|ref\|ZP_04401723.1\| glutamate synthase large subunit [Vibrio cholerae B33], gi\|229352209...	1676.0	[0..1]	[1481..1]

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Predicted Domain #1

Region A:
Residues: [1-1482]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLYHPSFER DNCGFGLIAQ MDGEASHRIV RTAIHGLDRM KHRGGIASDG RTGDGCGLLM  60
   61 QLPLQFFEAV AAENDWHLSR KFAVGMLFLS QDEELADQAK FILERELERE TLSIAGWRKV 120
  121 PVNPDVLGEI GKSSLPQIYQ VLINAPIGWR EKDLERRLYM ARRRLEQQIT DDKDFYVASL 180
  181 SGQVIVYKGL MMPADLPAFY PDLADIRLKS SICLFHQRFS TNTSPKWPLA QPFRYLAHNG 240
  241 EINTITGNRQ WARARAYKFN SPLLPDLQQA APFVNETGSD SSSLDNMLEM LLSGGMDLYR 300
  301 AMRLLIPPAW QSNPEMDDEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS 360
  361 RYVITKDRIL TLASEVGIWD YAADEVIEKG RVGPGELLVL DTLNGRLYQS FEIDNDLKRR 420
  421 HPYKEWMAKN SRTLIPAEQL TTEQHGASEL SPEQLLQYQK QFGYTREELE QVIWVLAKQG 480
  481 EEATGSMGDD TPMAVLSKKS RSLYDYFRQK FAQVTNPPID PLREKHVMSL ATCIGREQNL 540
  541 FNETTGHAYR VMFNSPILLF SDFNQLLGLD STYYRANIVD LNYEPKEGLE QAIRRITSEA 600
  601 ERLARSGTTL LILSDRAIDK SAQVIPVAMA VGAVQQMLVS KSLRCDTNII VETASARDPH 660
  661 HFAVLLGFGA TAIYPYLVYE SISDLAKRHD LTDTTALMLN FRYGIEKGLR KIMSKMGIST 720
  721 IGSYRCSQQF EAIGIASDVI ELCFKGVISR IEGASFEDIA NDQALLHKAA YRAHVPLPQG 780
  781 GLLKYVDGGE YHCFNPDVVN TLQASLIDKN FATYKKFAEL VDNRPIATLR DLIGIKAGQT 840
  841 AIELNNVEAA SNLYPRFDSA AMSIGALSPE AHEALAIAMN RLGGRSNSGE GGEDARRFNT 900
  901 ERNSAIKQIA SARFGVTAHY LVNADVLQIK VAQGAKPGEG GQLPGHKVSV EIAGLRHARP 960
  961 GVTLISPPPH HDIYSIEDLA QLIFDLKQIN TKALISVKLV SEPGVGTIAT GVAKAYADMI1020
 1021 TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVENGL RHKIRLQVDG GLKTGTDVIK1080
 1081 AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQD KKLRDNHYHG LPERVMTYFE1140
 1141 FVAEEVREWM ATLGVSKFED LVGRSEWLHT LEGQTDKQRG LDLAPILYQP NVRASTSRTW1200
 1201 QETNPPADLG LLNQHLLNEC QSAVDKGESF DAAYSINNTD RSVGARLSGY IATTLGVKGS1260
 1261 KAPIKLSFNG SAGQSFGVWN SPGLELKLCG DANDYVGKGM SGGKIVIYPP LGSPFQSERS1320
 1321 AIVGNTCLYG ATGGRFFAAG QAGERFAVRN SGAIAVVEGL GDNGCEYMTS GIVVVLGKTG1380
 1381 VNFGAGMTGG FAYVFDQFGR FNRRVNSELV DTQKLESPIQ QQHLKGLIEE HVAETGSEHA1440
 1441 KMILSDFANW LDCFVLVKPK NIAVADLLKL EQSSPELAVK AG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1llwA
Description:	Alpha subunit of glutamate synthase, C-terminal domain; Alpha subunit of glutamate synthase, central and FMN domains; Alpha subunit of glutamate synthase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamate synthase activity	10.2123323896554	bayes_pls_golite062009
glutamate synthase activity, NADH or NADPH as acceptor	9.64220719720108	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	8.40816887743017	bayes_pls_golite062009
glutamate synthase (NADPH) activity	7.71666213946687	bayes_pls_golite062009
oxidoreductase activity	2.15666801512485	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.330721070169443	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: