YRC Public Data Repository - Protein Structure Prediction

Protein:	SYY_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYY_SHEON.

Description	E-value	Query Range	Subject Range
gi\|53732864 - gi\|53732864\|ref\|ZP_00155182.2\| COG0162: Tyrosyl-tRNA synthetase [Haemophilus influenzae R2846]	404.0	[0..1]	[397..1]
gi\|114048453, gi... - gi\|78691914\|ref\|ZP_00856501.1\| Tyrosyl-tRNA synthetase, class Ib [Shewanella sp. MR-7], gi\|78508690\|...	404.0	[0..1]	[398..1]
gi\|126097732, gi... - gi\|126208940\|ref\|YP_001054165.1\| tyrosyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20], gi\|1... gi\|46143699 - gi\|46143699\|ref\|ZP_00134668.2\| COG0162: Tyrosyl-tRNA synthetase [Actinobacillus pleuropneumoniae ser...	403.0	[0..2]	[397..3]
gi\|117613828, gi... - gi\|78687562\|ref\|ZP_00852307.1\| Tyrosyl-tRNA synthetase, class Ib [Shewanella sp. ANA-3], gi\|78504706...	403.0	[0..1]	[398..1]
gi\|113971215, gi... - gi\|113971215\|ref\|YP_735008.1\| tyrosyl-tRNA synthetase [Shewanella sp. MR-4], gi\|113885899\|gb\|ABI3995...	401.0	[0..1]	[398..11]
gi\|69944586, gi\|... - gi\|91794161\|ref\|YP_563812.1\| tyrosyl-tRNA synthetase [Shewanella denitrificans OS217], gi\|91716163\|g...	400.0	[0..1]	[397..1]
SYY_AROAE - Tyrosine--tRNA ligase OS=Aromatoleum aromaticum (strain EbN1) GN=tyrS PE=3 SV=1	399.0	[0..1]	[397..1]
gi\|112823493, gi... - gi\|23467169\|ref\|ZP_00122753.1\| COG0162: Tyrosyl-tRNA synthetase [Haemophilus somnus 129PT], gi\|11346... gi\|170718444, gi... - gi\|53728459\|ref\|ZP_00132636.2\| COG0162: Tyrosyl-tRNA synthetase [Haemophilus somnus 2336], gi\|170718...	398.0	[0..1]	[397..1]
SYY_MANSM - Tyrosine--tRNA ligase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=tyrS PE=3 SV=1	397.0	[0..1]	[397..1]
gi\|42631561 - gi\|42631561\|ref\|ZP_00157099.1\| COG0162: Tyrosyl-tRNA synthetase [Haemophilus influenzae R2866] gi\|145273576, gi... - gi\|145641762\|ref\|ZP_01797338.1\| tyrosyl-tRNA synthetase [Haemophilus influenzae R3021], gi\|145273576... gi\|145641762 - gi\|145641762\|ref\|ZP_01797338.1\| tyrosyl-tRNA synthetase [Haemophilus influenzae R3021] gi\|145271011, gi... - gi\|145639920\|ref\|ZP_01795520.1\| tyrosyl-tRNA synthetase [Haemophilus influenzae PittII], gi\|14527101...	396.0	[0..1]	[397..1]

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Predicted Domain #1

Region A:
Residues: [1-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLDQVLAE IRRGTDEILL ESDLLEKLKK GRPLRIKLGA DPTAPDIHLG HTVILNKLRL  60
   61 FQELGHEVIF LIGDFTGMVG DPSGKNSTRP PLTREQVLAN AETYKEQVYK ILDPAKTRIE 120
  121 FNSSWLEPLG AAGMIRLASQ QTVARMMERD DFKKRYASGQ SIAIHEFMYP LLQGYDSVAL 180
  181 KADVELGGTD QKFNLLMGRE LQKAEGQKPQ AVIMMPLLEG LDGVKKMSKS AHNYIGVSEP 240
  241 ANEMFGKIMS ISDELMWRYF ELLSFRPLAE IEQFKQDIAN GANPRDTKIS LAKEIIARFH 300
  301 DAAAAESAHQ AFIDRFQKGA IPDDIPEVEL AAGEGLAIAN LLKDADLVGS TSDALRMIKQ 360
  361 GAVKMDGEKI DDSRMTLSAG TVAVFQVGKR KFAKVTLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.522879
Match:	1h3eA
Description:	Tyrosyl-tRNA synthetase (TyrRS); Tyrosyl-trna synthetase (TyrRS), C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
tyrosine-tRNA ligase activity	6.18775771640881	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
structural constituent of ribosome	4.38130670432475	bayes_pls_golite062009
structural molecule activity	4.02543122782129	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
methionine-tRNA ligase activity	2.56893064485672	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
arginine-tRNA ligase activity	1.50161401062914	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
nucleic acid binding	0.926923419656671	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
binding	0.803280718980961	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.625793556381714	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: