YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346836, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346836, gi|....

Description	E-value	Query Range	Subject Range
gi\|85693183, gi\|... - gi\|85713014\|ref\|ZP_01044052.1\| Mg/Co transporter [Idiomarina baltica OS145], gi\|85693183\|gb\|EAQ31143...	208.0	[0..1]	[282..1]
gi\|127513854, gi... - gi\|78368762\|ref\|ZP_00838969.1\| CBS:Transporter-associated region [Shewanella sp. PV-4], gi\|78359203\|...	204.0	[0..1]	[289..1]
gi\|114333186, gi... - gi\|69950411\|ref\|ZP_00638310.1\| CBS:Transporter-associated region [Shewanella frigidimarina NCIMB 400...	204.0	[0..1]	[291..1]
gi\|68548419, gi\|... - gi\|68548419\|ref\|ZP_00587923.1\| CBS:Transporter-associated region [Shewanella amazonensis SB2B], gi\|6...	203.0	[0..1]	[291..1]
gi\|82743377, gi\|... - gi\|82743377\|ref\|ZP_00906027.1\| CBS [Shewanella sp. W3-18-1], gi\|82719279\|gb\|EAP54195.1\| CBS [Shewane... gi\|124546215, gi... - gi\|124546215\|ref\|ZP_01705320.1\| CBS domain containing protein [Shewanella putrefaciens 200], gi\|1245...	202.0	[0..1]	[291..1]
gi\|145565642, gi... - gi\|77816352\|ref\|ZP_00815547.1\| CBS:Transporter-associated region [Shewanella putrefaciens CN-32], gi...	201.0	[0..1]	[291..1]
gi\|153001815, gi... - gi\|153001815\|ref\|YP_001367496.1\| CBS domain-containing protein [Shewanella baltica OS185], gi\|151366... gi\|149117316, gi... - gi\|217972290\|ref\|YP_002357041.1\| CBS domain containing protein [Shewanella baltica OS223], gi\|217497... gi\|68544179, gi\|... - gi\|68544179\|ref\|ZP_00583847.1\| CBS:Transporter-associated region [Shewanella baltica OS155], gi\|6851... gi\|113949365, gi... - gi\|160876548\|ref\|YP_001555864.1\| CBS domain-containing protein [Shewanella baltica OS195], gi\|160862...	201.0	[0..1]	[291..1]
gi\|91714175, gi\|... - gi\|91792173\|ref\|YP_561824.1\| CBS:transporter associated [Shewanella denitrificans OS217], gi\|9171417...	201.0	[0..1]	[290..1]
gi\|114046572, gi... - gi\|78691815\|ref\|ZP_00856408.1\| CBS [Shewanella sp. MR-7], gi\|78508782\|gb\|EAP22211.1\| CBS [Shewanella... gi\|113969345, gi... - gi\|82498443\|ref\|ZP_00883940.1\| CBS [Shewanella sp. MR-4], gi\|82403560\|gb\|EAP44284.1\| CBS [Shewanella...	200.0	[0..1]	[291..1]
gi\|55980703, gi\|... - gi\|55980703\|ref\|YP_144000.1\| hemolysin-related protein [Thermus thermophilus HB8], gi\|55772116\|dbj\|B...	200.0	[0..25]	[274..182]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDIPPSTN AQKKSWFDRV SQLFQGEPQN REDLVDVIDG AEQRELISED TREMIKGVLE  60
   61 VSDMRVRDIM IPRAQIVAIQ IDNTVEELLR TVIGSGHSRF PVVNEDKDHI EGILLAKDLI 120
  121 PYGFSNSEEP FSLDRVIRPA VVVPESKRVD VLLKEFRSQR YHMAIVVDEY GGVSGLVTIE 180
  181 DILEEIVGEI EDEFDHDSPE DTEIRKVGNT VYMVKALTPI EDFNEEFNTH FSDEEFDTVG 240
  241 GLVSHAFGHL PERNESIMIE GIEFKVINAD TRRLIQLRVK LPDHNIGEDV E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1jcnA
Description:	Inosine monophosphate dehydrogenase (IMPDH); Type II inosine monophosphate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	5.02895256941344	bayes_pls_golite062009
ion transmembrane transporter activity	2.30714747153741	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.05832395284653	bayes_pls_golite062009
metal ion transmembrane transporter activity	1.77666157413171	bayes_pls_golite062009
cation transmembrane transporter activity	1.5512605628205	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	1.46421916456482	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.11928485686295	bayes_pls_golite062009
transporter activity	0.666337333933876	bayes_pls_golite062009
transmembrane transporter activity	0.534933550137003	bayes_pls_golite062009
substrate-specific transporter activity	0.26029124809786	bayes_pls_golite062009
anion transmembrane transporter activity	0.0796146522242194	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: