YRC Public Data Repository - Protein Structure Prediction

Protein:	KATG2_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	741 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KATG2_SHEON.

Description	E-value	Query Range	Subject Range
KATG_SYMTH - Catalase-peroxidase OS=Symbiobacterium thermophilum GN=katG PE=3 SV=1 KATG_SYMTH - Catalase-peroxidase OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=katG PE=3 SV=1	801.0	[0..26]	[741..8]
KATG_CHLCH - Catalase-peroxidase OS=Chlorobium chlorochromatii (strain CaD3) GN=katG PE=3 SV=1	799.0	[0..24]	[741..14]
gi\|83677284, gi\|... - gi\|83677284\|ref\|ZP_00939038.1\| COG0376: Catalase (peroxidase I) [Burkholderia pseudomallei 406e], gi... gi\|194505375, gi... - gi\|99907482\|ref\|ZP_01315396.1\| hypothetical protein Bpse1_03005273 [Burkholderia pseudomallei 1655],... gi\|161371379, gi... - gi\|90290077\|ref\|ZP_01209758.1\| hypothetical protein Bpse17_02005234 [Burkholderia pseudomallei 1710a... gi\|254191555, gi... - gi\|67752477\|ref\|ZP_00491456.1\| COG0376: Catalase (peroxidase I) [Burkholderia pseudomallei Pasteur],... gi\|100120044, gi... - gi\|67757966\|ref\|ZP_00496760.1\| COG0376: Catalase (peroxidase I) [Burkholderia pseudomallei S13], gi\|... KATG_BURP1 - Catalase-peroxidase OS=Burkholderia pseudomallei (strain 1710b) GN=katG PE=3 SV=1 gi\|134248037, gi... - gi\|134280030\|ref\|ZP_01766741.1\| catalase/peroxidase HPI [Burkholderia pseudomallei 305], gi\|13424803... KATG_BURPS - Catalase-peroxidase OS=Burkholderia pseudomallei (strain K96243) GN=katG PE=1 SV=3 gi\|167847209 - gi\|167847209\|ref\|ZP_02472717.1\| catalase/peroxidase HPI [Burkholderia pseudomallei B7210] gi\|167895795 - gi\|167895795\|ref\|ZP_02483197.1\| catalase/peroxidase HPI [Burkholderia pseudomallei 7894] gi\|226198394, gi... - gi\|226198394\|ref\|ZP_03793963.1\| catalase/peroxidase HPI [Burkholderia pseudomallei Pakistan 9], gi\|2... gi\|167721131 - gi\|167721131\|ref\|ZP_02404367.1\| catalase/peroxidase HPI [Burkholderia pseudomallei DM98] KATG_BURPS - Catalase-peroxidase OS=Burkholderia pseudomallei GN=katG PE=1 SV=3 gi\|167825723 - gi\|167825723\|ref\|ZP_02457194.1\| catalase/peroxidase HPI [Burkholderia pseudomallei 9] gi\|167920397 - gi\|167920397\|ref\|ZP_02507488.1\| catalase/peroxidase HPI [Burkholderia pseudomallei BCC215] gi\|167904183 - gi\|167904183\|ref\|ZP_02491388.1\| catalase/peroxidase HPI [Burkholderia pseudomallei NCTC 13177] gi\|167912442 - gi\|167912442\|ref\|ZP_02499533.1\| catalase/peroxidase HPI [Burkholderia pseudomallei 112]	791.0	[0..16]	[741..1]
gi\|53720473, gi\|... - gi\|53720473\|ref\|YP_109459.1\| catalase-peroxidase protein [Burkholderia pseudomallei K96243], gi\|5221... gi\|134104299, gi... - gi\|22711993\|gb\|AAK72466.3\| catalase-peroxidase protein KatG [Burkholderia pseudomallei], gi\|13410430...	791.0	[0..16]	[741..21]
gi\|85065545 - gi\|85065545\|ref\|ZP_01026398.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei 10229] gi\|87313808, gi\|... - gi\|87313808\|ref\|ZP_01094878.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei 2002721280], gi... KATG_BURP6 - Catalase-peroxidase OS=Burkholderia pseudomallei (strain 668) GN=katG PE=3 SV=1 KATG_BURMS - Catalase-peroxidase OS=Burkholderia mallei (strain SAVP1) GN=katG PE=3 SV=1 gi\|161357056, gi... - gi\|82538657\|ref\|ZP_00897650.1\| hypothetical protein Bpse110_02000352 [Burkholderia pseudomallei 1106... gi\|254202662, gi... - gi\|83619743\|ref\|ZP_00930172.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei FMH], gi\|254202... KATG_BURP0 - Catalase-peroxidase OS=Burkholderia pseudomallei (strain 1106a) GN=katG PE=3 SV=1 gi\|67642350 - gi\|67642350\|ref\|ZP_00441108.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei GB8 horse 4] KATG_BURMA - Catalase-peroxidase OS=Burkholderia mallei (strain ATCC 23344) GN=katG PE=3 SV=1 KATG_BURM7 - Catalase-peroxidase OS=Burkholderia mallei (strain NCTC 10247) GN=katG PE=3 SV=1 gi\|83624548, gi\|... - gi\|83624548\|ref\|ZP_00934793.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei JHU], gi\|254208... gi\|67637869, gi\|... - gi\|67637869\|ref\|ZP_00436807.1\| COG0376: Catalase (peroxidase I) [Burkholderia mallei 10399], gi\|1009... KATG_BURM9 - Catalase-peroxidase OS=Burkholderia mallei (strain NCTC 10229) GN=katG PE=3 SV=1 gi\|254178883, gi... - gi\|254178883\|ref\|ZP_04885537.1\| catalase/peroxidase HPI [Burkholderia mallei ATCC 10399], gi\|1943181... gi\|167004244 - gi\|167004244\|ref\|ZP_02270007.1\| catalase/peroxidase HPI [Burkholderia mallei PRL-20] gi\|167740102 - gi\|167740102\|ref\|ZP_02412876.1\| catalase/peroxidase HPI [Burkholderia pseudomallei 14] KATG_BURMA - Catalase-peroxidase OS=Burkholderia mallei GN=katG PE=3 SV=1	789.0	[0..16]	[741..1]
KATG_PSEU2 - Catalase-peroxidase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=katG PE=3 SV=1	789.0	[0..16]	[741..1]
gi\|58177257, gi\|... - gi\|58177258\|pdb\|1X7U\|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg, gi\|58177...	788.0	[0..16]	[741..21]
gi\|83749008, gi\|... - gi\|83749008\|ref\|ZP_00946016.1\| peroxidase / catalase [Ralstonia solanacearum UW551], gi\|83724346\|gb\|...	787.0	[0..16]	[740..1]
gi\|4140060 - gi\|4140060\|dbj\|BAA36988.1\| catalase [Geobacillus stearothermophilus]	787.0	[0..18]	[741..8]

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Predicted Domain #1

Region A:
Residues: [1-741]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINTLPTLS ALTLAMSLAL GAGMATAQEQ ATGNQFWWPE KLNLSPLRQN AIESNPYGSD  60
   61 YRYAEAFNTL DLDAVKKDIK ALMTESQDWW PADYGHYGPF FIRMAWHSAG VYRIFDGRGG 120
  121 AAGGQQRFEP LNSWPADNVS LDKARRLLWP IKQKYGSKLS WGDLMVLTGN VALESMGFKT 180
  181 FGFGGGRVDD WEAEMVNWGS EKAWLDNKRH NGKGELAKPM GATQMGLIYV NPEGPNGVPD 240
  241 PLASAKEIRD TFGRMAMNDE ETVALIAGGH TFGKAHGAHD PAKCVGADPA AAGIEEQGLG 300
  301 WKNKCGKGHS EDTVTSGLEG AWSSNPTKWT MEYLTWLYTF DWVQTKSPAG HIQWTPADGK 360
  361 AANLVPDAHL PDKRHAPIMF TSDIALKADP IYREITTRFL KNPQEFELAF AKAWFKLTHR 420
  421 DLGPKARYLG ADVPAEALIW QDPIPALDHP LIDNADIKAL GNKILASGLT VPELVRTAWA 480
  481 SASSFRGTDM RGGANGARIR LEPMMNWQAN NPKELAKVLA KLEKVQKDFN GSLKGSKKVS 540
  541 LADVIVLGGS VAVEKAAKEA GVVISVPFTP GRMDATQVQT DVNSFAVLEP AADGFRNYYS 600
  601 KDSSLSPAEM LIERANMLNL TVPEMTVLVG GLRALDANSA GVKHGVFTDK PGVLSNDFFV 660
  661 NLLDMSTKWR KSDKQEGIYE GQDRNSGKLK WTATPVDLIF GSHSELRAVS EVYGAQDGQD 720
  721 RFIQDFVKAW NKVMNADRFD I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2dv1A
Description:	No description for 2dv1A was found.

Predicted functions:

Term	Confidence	Notes
peroxidase activity	4.89687944660423	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	4.89687944660423	bayes_pls_golite062009
antioxidant activity	4.55211953527401	bayes_pls_golite062009
oxidoreductase activity	2.03744373078547	bayes_pls_golite062009
catalase activity	1.75972879470996	bayes_pls_golite062009
binding	0.451054568642481	bayes_pls_golite062009
catalytic activity	0.190481430370391	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: