YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346174, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346174, gi|....

Description	E-value	Query Range	Subject Range
gi\|28198894, gi\|... - gi\|28198894\|ref\|NP_779208.1\| phage-related lysozyme [Xylella fastidiosa Temecula1], gi\|28056985\|gb\|A...	186.0	[0..12]	[176..37]
gi\|11362473 - pir\|\|H82653 phage-related lysozyme XF1669 XF1564 [imported] - Xylella fastidiosa (strain 9a5c) gi\|15838165, gi\|... - gi\|9106729\|gb\|AAF84478.1\|AE003992_14 phage-related lysozyme [Xylella fastidiosa 9a5c], gi\|9106609\|gb...	184.0	[0..12]	[176..37]
gi\|71902204, gi\|... - gi\|71902204\|ref\|ZP_00684217.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Ann-1], gi\|7172804...	182.0	[0..14]	[176..1]
gi\|160875242, gi... - gi\|160875242\|ref\|YP_001554558.1\| glycoside hydrolase family protein [Shewanella baltica OS195], gi\|1...	181.0	[0..1]	[185..1]
gi\|71163458, gi\|... - gi\|71275567\|ref\|ZP_00651852.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Dixon], gi\|7116345... gi\|71729464, gi\|... - gi\|71900787\|ref\|ZP_00682907.1\| Glycoside hydrolase, family 24 [Xylella fastidiosa Ann-1], gi\|7172946...	178.0	[0..14]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKLKAFLM AAGLSSAAIT GAQLTDKWEG NSLTVYVDAV GVLTACRGHT SKDLKLGQTF  60
   61 TEQECMEIFA KDIARADKQL LQLTATVRLT DSEHAAYLSF MHWAGYGNFA SSTLRKKLLA 120
  121 GDRVGACKEL TQACSTNQQT GERVCNGWTY GTRLGVKVRL NGLIKRRAEE QAICLSELTV 180
  181 GGLTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1xjtA
Description:	Crystal structure of active form of P1 phage endolysin Lyz
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
penicillin binding	2.64957480679626	bayes_pls_golite062009
catalytic activity	1.95328415115451	bayes_pls_golite062009
lysozyme activity	1.83799209924951	bayes_pls_golite062009
drug binding	1.54697929389118	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	1.16054683174437	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.07226857049823	bayes_pls_golite062009
hydrolase activity	0.677491712259	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.45061419828567	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: