YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346066, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346066, gi|....

Description	E-value	Query Range	Subject Range
gi\|28204455, gi\|... - gi\|28212012\|ref\|NP_782956.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium tetani E88], gi\|28204455\|...	275.0	[0..1]	[264..1]
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	275.0	[0..1]	[264..1]
gi\|1903327 - gi\|1903327\|emb\|CAB07495.1\| crotonase [Thermoanaerobacterium thermosaccharolyticum] gi\|1903327\|emb\|C... - crotonase [Thermoanaerobacterium thermosaccharolyticum]	272.0	[0..1]	[264..1]
gi\|15920248, gi\|... - gi\|15920248\|ref\|NP_375917.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus tokodaii str. 7], gi\|156...	271.0	[0..4]	[264..398]
gi\|241218800, gi... - gi\|241769557\|ref\|ZP_04766976.1\| Enoyl-CoA hydratase/isomerase [Sulfolobus solfataricus 98/2], gi\|241... gi\|25291790 - pir\|\|A90436 enoyl CoA hydratase (paaF-7) [imported] - Sulfolobus solfataricus gi\|13815932, gi\|... - gi\|15899349\|ref\|NP_343954.1\| enoyl CoA hydratase (paaF-7) [Sulfolobus solfataricus P2], gi\|13815932\|...	269.0	[0..3]	[260..9]
gi\|70606884, gi\|... - gi\|70606884\|ref\|YP_255754.1\| 3-hydroxybutyryl-CoA dehydrogenase [Sulfolobus acidocaldarius DSM 639],...	267.0	[0..2]	[264..407]
gi\|77997022, gi\|... - gi\|78044907\|ref\|YP_360429.1\| 3-hydroxybutyryl-CoA dehydratase [Carboxydothermus hydrogenoformans Z-2...	267.0	[0..1]	[264..1]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	267.0	[0..1]	[264..1]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	266.0	[0..1]	[264..1]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	266.0	[0..1]	[264..1]

Back

Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGERCVQVTV ENGIANVVLN RPEKFNAINY LMFSELDKAI KRIKSDPRIR LVILSGAGGH  60
   61 FSSGLDVKSV MSAPMQAVKL LFKGLPGNAN LAQRVSIGWQ RLPVPVIAVL EGCCYGGGMQ 120
  121 IALGADFRIA CPNSKLSIME AKWGLVPDMA GLVALRQIMP KDQAMLLSLT AKVLSGEEAK 180
  181 ALGLVTQLSD NPMLSAQQLA EELLNTSPDA AAAIKLSINR SWTASVRSLL CRESWSQVRL 240
  241 LLGKNRTIAA VRQLKDPTKP YKDRQSGW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1ey3A
Description:	Enoyl-CoA hydratase (crotonase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
enoyl-CoA hydratase activity	2.4936174743705	bayes_pls_golite062009
CoA carboxylase activity	2.3255403078982	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	2.24331960813885	bayes_pls_golite062009
acetyl-CoA carboxylase activity	1.90441335082106	bayes_pls_golite062009
catalytic activity	1.83198156728699	bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity	1.0019269609588	bayes_pls_golite062009
dodecenoyl-CoA delta-isomerase activity	0.92729482343604	bayes_pls_golite062009
ligase activity	0.53243272380512	bayes_pls_golite062009
propionyl-CoA carboxylase activity	0.45280848544351	bayes_pls_golite062009
3-hydroxybutyryl-CoA epimerase activity	0.32149629337291	bayes_pls_golite062009
racemase and epimerase activity, acting on hydroxy acids and derivatives	0.180843676143191	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: